*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat deletion-line bins
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps CS-deletions-2D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
breakpointinterval
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat deletion-line bins [ View Map Set Info ]
Map Name: CS-deletions-2D
Map Start: -1
Map Stop: 1
Features by Type:
6 breakpointinterval
6 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 6 of 6.
Wheat ABD - Wheat deletion-line bins - CS-deletions-2D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
2DS5-0.47-1.00 breakpointinterval -1 - -0.47 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D 2DS5-0.47-1.00 breakpointinterval -1 - -0.47 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D 2DS5-0.47-1.00 breakpointinterval -1 - -0.47 () Automated name-based View Maps
2DS1-0.33-0.47 breakpointinterval -0.47 - -0.33 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D 2DS1-0.33-0.47 breakpointinterval -0.47 - -0.33 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D 2DS1-0.33-0.47 breakpointinterval -0.47 - -0.33 () Automated name-based View Maps
C-2DS1-0.33 breakpointinterval -0.33 - 0 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D C-2DS1-0.33 breakpointinterval -0.33 - 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D C-2DS1-0.33 breakpointinterval -0.33 - 0 () Automated name-based View Maps
C-2DL3-0.49 breakpointinterval 0 - 0.49 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D C-2DL3-0.49 breakpointinterval 0 - 0.49 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D C-2DL3-0.49 breakpointinterval 0 - 0.49 () Automated name-based View Maps
2DL3-0.49-0.76 breakpointinterval 0.49 - 0.76 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D 2DL3-0.49-0.76 breakpointinterval 0.49 - 0.76 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D 2DL3-0.49-0.76 breakpointinterval 0.49 - 0.76 () Automated name-based View Maps
2DL9-0.76-1.00 breakpointinterval 0.76 - 1 Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_2D 2DL9-0.76-1.00 breakpointinterval 0.76 - 1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_2D 2DL9-0.76-1.00 breakpointinterval 0.76 - 1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.