GrainGenes-SQL Query Resources: Contig Information [Instructions]

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Query Results

5 contigs found:

NSFT03P2_Contig18357 with 20 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AF43997416280Hordeum vulgare SGT1 (SGT1) mRNA, complete cds
BLASTX
accessionscoree-valuedescription
AAL336106610(AF439974) SGT1 [Hordeum vulgare]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 1482bp ( '-' ~= 25bp)
Consensus 1-1482----------------------------------------------------------->
BQ579481 1-623
------------------------>
BQ295431 73-842
  ------------------------------->
BQ842622 94-692
   ------------------------>
BE585513 503-1195
                   ---------------------------->
BE585610 503-1030
                   ---------------------->
BE515568 529-1084
                    ----------------------->
BE516155 548-1147
                     <------------------------
BE488573 550-1069
                     --------------------->
BM136010 553-1196
                     -------------------------->
BE443144 604-1235
                       -------------------------->
BE445593 604-1147
                       ---------------------->
BG607703[P]744-1475
                             <------------------------------
BQ841437 773-1479
                              <-----------------------------
BF199592 780-1365
                               ----------------------->
BG314465 803-1445
                                <--------------------------
BE445730 1000-1377
                                       ---------------->
BE445665 1016-1482
                                        <-------------------
BE442917 1017-1377
                                        --------------->
BF293413 1105-1474
                                            <---------------
BG314045 1136-1447
                                             <-------------
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA008E3N5T.aestivum / root / seedling
TM043E1X3T.monococcum / shoot apex / 7-week old plants
TA012XXX2T.aestivum / embryo / mature, dormant seeds
TA049E1X2T.aestivum / embryo / mature, dormant seeds
TA006G1X2T.aestivum / spike / adult
TM011XXX1T.monococcum / shoot apex / 5-week old plants
TT039E1X1T.turgidum / all types / mature plant
TA006E2N1T.aestivum / shoot / seedling
TA009XXX1T.aestivum / spike / mature plant
TA047E1X1T.aestivum / root tip / seedling
AS067E1X1A.speltoides / anther / early premeiotic stage