GrainGenes-SQL Query Resources: Contig Information [Instructions]

start over Query by Contig Name, Member Name, or Member accession Query Type Query Target  
Search:

Query Results

5 contigs found:

NSFT03P2_Contig16345 with 8 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
NT_0363235851e-164Oryza sativa (japonica cultivar-group), chromosome 1, contig 1.2
BLASTX
accessionscoree-valuedescription
BAB212092211e-56(AP002913) putative ribosomal protein L26 [Oryza sativa (japonica cultivar-group)]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 955bp ( '-' ~= 16bp)
Consensus 1-955----------------------------------------------------------->
CA498246 1-517
------------------------------->
BE495648 234-600
              ----------------------->
BE488996 235-565
              -------------------->
BE493996 250-669
               -------------------------->
BE517533 371-873
                      <--------------------------------
BQ579498 410-955
                         <----------------------------------
BE516864 492-955
                              <-----------------------------
BE516445 529-726
                                ------------->
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA012XXX3T.aestivum / embryo / mature, dormant seeds
SC024E1X2S.cereale / anther / mature plant
TA054XXX1T.aestivum / anther / early meiotic stage
TA006E2N1T.aestivum / shoot / seedling
TA049E1X1T.aestivum / embryo / mature, dormant seeds