GrainGenes-SQL Query Resources: Contig Information [Instructions]

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Query Results

4 contigs found:

NSFT03P2_Contig7641 with 2 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AY1092421211e-24Zea mays PCO115415 mRNA sequence
BLASTX
accessionscoree-valuedescription
NP_175129962e-19(NM_103589) hypothetical protein; protein id: At1g45150.1 [Arabidopsis thaliana]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 529bp ( '-' ~= 9bp)
Consensus 1-529----------------------------------------------------------->
BE517235 1-529
----------------------------------------------------------->
BQ172051 164-362
                  ---------------------->
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA032E1X1T.aestivum / spike / post-anthesis
TA012XXX1T.aestivum / embryo / mature, dormant seeds