GrainGenes-SQL Query Resources: Contig Information [Instructions]

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NSFT03P2_Contig18083 with 16 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AY10416912670Zea mays PCO099315 mRNA sequence
BLASTX
accessionscoree-valuedescription
BAA7874411700(AB023482) EST AU065533(C2174) corresponds to a region of the predicted gene.~Similar to Homo sapiens splicing factor Prp8 mRNA, complete cds.(AF092565) [Oryza sativa (japonica cultivar-group)]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 2066bp ( '-' ~= 34bp)
Consensus 1-2066----------------------------------------------------------->
BI479933 1-633
----------------->
BI479922 1-491
------------->
CA502094 144-844
   --------------------->
BE500043 253-837
      ----------------->
BQ801857 293-997
        -------------------->
BG606117 428-1000
           ----------------->
CA497155 501-643
              <----
CA499944 642-1363
                  --------------------->
BF293649 928-1326
                          ------------>
BG606203 1010-1366
                            ----------->
BU100917 1244-1937
                                   -------------------->
BG606312 1249-1743
                                   --------------->
BE517032 1263-1735
                                    ------------->
BG274948[P]1295-1753
                                     ------------->
CD454833 1410-2035
                                        <------------------
BQ168534 1658-2066
                                               <------------
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA019E1X4T.aestivum / spike / pre-anthesis
TA049E1X3T.aestivum / embryo / mature, dormant seeds
TA054XXX3T.aestivum / anther / early meiotic stage
TA038E1X2T.aestivum / crown / seedling
TM046E1X1T.monococcum / shoot apex / 1-month old plants
TT039E1X1T.turgidum / all types / mature plant
TA012XXX1T.aestivum / embryo / mature, dormant seeds
TA056E1X1T.aestivum / root tip / seedling