GrainGenes-SQL Query Resources: Contig Information [Instructions]

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Query Results

NSFT03P2_Contig18637 with 29 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AY1081315591e-156Zea mays PCO114887 mRNA sequence
BLASTX
accessionscoree-valuedescription
NP_2008752971e-79(NM_125460) 60S ribosomal protein L12 - like; protein id: At5g60670.1, supported by cDNA: 42276., supported by cDNA: gi_14517557, supported by cDNA: gi_18700231 [Arabidopsis thaliana]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 892bp ( '-' ~= 15bp)
Consensus 1-892----------------------------------------------------------->
BQ805675 1-680
--------------------------------------------->
BQ801343 10-805
----------------------------------------------------->
BE406292 11-339
---------------------->
BE515859 12-556
------------------------------------>
BF482511 12-633
------------------------------------------>
BE493657 18-403
-------------------------->
BQ295201 23-786
 --------------------------------------------------->
BU099646 29-567
 ------------------------------------>
BQ578916 29-478
 ------------------------------>
BQ803215 29-787
 --------------------------------------------------->
BQ744279 29-704
 --------------------------------------------->
BE423832 29-559
 ------------------------------------>
BG263706 53-557
   --------------------------------->
BI478999 53-575
   ----------------------------------->
BG607910 53-576
   ----------------------------------->
BU100724 57-751
   ----------------------------------------------->
BQ803898 89-629
     ------------------------------------>
BG314039 91-293
     -------------->
BF292674 91-498
     --------------------------->
BG312657 91-474
     -------------------------->
BF473526 98-508
      --------------------------->
BE516058 163-575
          ---------------------------->
CD453284 178-806
           <------------------------------------------
BG314239 207-793
             --------------------------------------->
BQ803162 241-764
               <-----------------------------------
BG607525 305-791
                    <--------------------------------
BQ800714 336-892
                      ------------------------------------->
WHE3954_F01_L02ZS 374-751
                        -------------------------->
BE492337 507-751
                                 ----------------->
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TM043E1X5T.monococcum / shoot apex / 7-week old plants
TM046E1X5T.monococcum / shoot apex / 1-month old plants
TA049E1X2T.aestivum / embryo / mature, dormant seeds
TA012XXX2T.aestivum / embryo / mature, dormant seeds
TA019E1X2T.aestivum / spike / pre-anthesis
TM011XXX2T.monococcum / shoot apex / 5-week old plants
TA018E1X1T.aestivum / spike / post-anthesis
TA047E1X1T.aestivum / root tip / seedling
TA065E1X1T.aestivum / root / seedling
TA059E1X1T.aestivum / whole grain / 3-44 days post anthesis
TA008E1X1T.aestivum / root / seedling
AS040E1X1A.speltoides / anther / premeiotic stage
TA056E1X1T.aestivum / root tip / seedling
TA001E1X1T.aestivum / endosperm / 5-30 days post anthesis
TA055E1X1T.aestivum / root / full tillering
SC024E1X1S.cereale / anther / mature plant
TA009XXX1T.aestivum / spike / mature plant