gpw93003
CAAGTGTCATGACTTTCAATCCTCTGCATCATATGAACACTAAAGAATTCGGCACCTCAG
AAGAGATAGAGATGAACATGTATGATCATTGGATAGACACTTATGATTTCTTTGAGTAAA
GGGCGGTCAATGACTGGTATTGACCAAGGGTTCCCCTATTTAGTTGTTATGATCTCTCCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGTAAACTCTCATCATGATTAGTGGAT
GGTATCTTCCTCTTCTACAAGTTGTAGTAACTTAGCTTTAGAACCCTAGAACTACTTGGT
AGACTAAGGTGATCTCTGAAACTTGTATAAAATTACCAAATCGGGGAATATGTTGTTGGG
GAACGTTGCATGAAACCAAAAAAAAATCCCACGCCCACACAAGATCTATCAAGGAGATGC
ATAGAAACGAGAGGGGAGAGTGTGTCTACGTACCCTTGTAGACCGTAAGCAAAGCGTTTC
ACAACGCGATTGATGTAGN
Forward: AATGACTGGTATTGACCAAGGG
Reverse: CAACATATTCCCCGATTTGG
SSR motif:(TC)3 C (TC)16
Annealing temperature: 55-60°C
Observed alleles: 3
Expected size: 227 bp
Chromosome LDN substitution line and DT analysis: 7BL
Comments: Polymorphic between Messapia and MG4343: mapped on 7BL (close to the centromere, between XksuH1 and Xubp9).
gpw93010
AATCCGCGGGCTTGAGAGCAAGAACACTAGAGAGAGAGAGAGAGAGAGAGAGCAATGGTG
ATTTTTTTCTGGAGGTAGGAGATGGAATGGGCTGAAGCGATAAGTGAGGAGGCCCACGTG
GTGACCACAACCCATCAGGGCGCCTGGGCTGCAGGCGTGCCCAGGTGGGTTGTGCCCACC
TGGTGCACCCCCCCTCTCATGTTATTTGCACTAAAAATTCAGAAATAGTCAAAAGAAACG
TATTAAATTTCTAGGGCATTTAGAGAACTTTTATTTTTGGGTCATTTTTTATTGCAAGGG
AAAATTCAAAAAAAGATAAAACATGGCATTTTAATTTATTTAACTAAGAAAAACAGAAAA
AGAAAGATAAGGACAGAAGGTAGTGCTCATTAAATTCATCAACTTCATACCCCTCAAAGA
TGATCCATTAATATGGTTGATCAAGTCTTATTAACAACCACCT
Forward: GGGCTTGAGAGCAAGAACAC
Reverse: GGCCTCCTCACTTATCGCTT
Reverse 2: GGCCTCCTCACTTATCGCTT
SSR motif:(AG)12
Annealing temperature: 60°C
Alleles observed: 1
Expected size: Fow-Rev 107, Fow Rev2 134 bp
Chromosome LDN substitution line analysis: Fow.-Rev. not essayed; Fow.-Rev.2 unlocated
Comments: Fow.-Rev. combination produces a complex banding pattern with several faint bands (250-900 bp). Fow.-Rev.2 (following photo) produces a monomorphic strong band (>400bp). Probable intron(s) between primer regions.
gpw93013
AAAAGGCCATGATATGTCTCTATTGTATCTATAATTCTTGATTGTTTCATGCCAATATTC
TAGAACTTTTATATACATTTGGCGATATTTTATATTATTTTTGGGACTAACATATTGATC
CAGTGCCCAGTGCCAGTTCCTTTTTTTTGTTTCACAGAAAATCCATATCAAACGAAGTCC
ACACGCGATAAAATTTTACGAAGATTTATTTTGGAATATATGTGATTTTTGGGAAGAAGA
ATCAACAGAAGACAGTGCCCGAGGGACCCACAAGGCAATAGGGCACACCCTGGGGTAGGG
CGTGCCGTGTTTCATTGTGACTCCCTCATAAGTCGGTTGGAGCCCTTCTTTCGCCGCAAG
AAAGATAATTTCCATAGAATAATACCTACAAACTTTTAGCCCAATCAGAGTTACGGATCT
CCAGGAATAAAAAAAGTGGTGAAGGGATCCGAAAACAGACGTGAAACAAAAGAGGAACAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATCCAATCTCGGAGGGGC
TCGTGCCCTTCGGGAGCCATGGCGGCCAAGGAACAGAGATGAAACCCTCCTCCCATCTAG
GGGGAGTCCAAGGAAGAATAAGGAGGGGGGAGGGACTCTCCCCTCTCTTCCGGTGGCACC
AGAGCACCT
Forward: GTGAAGGGATCCGAAAACAG
Reverse: ATGGGAGGAGGGTTTCATCT
SSR motif:(AG)22
Annealing temperature: 60°C
Observed alleles: 5-6
Expected size: 158 bp
Chromosome LDN substitution line analysis: 1BL
Comments: Polymorphic between Messapia and MG4343: mapped on 1BL (between Glu-B1 and Xutv618)
gpw93017
GCGAACAACATCAGCAGACTTGGAAGATTTTATCATAAGAAAAAAAGATGCTCGTGTTCC
TACTGTTTCAAAATTCTTCGCAATCGCCTGCAACAGCATAGGCGATCAGAAGAGGATCAC
GATATGGACTCTGCATGAGTTTGTGTTTGTTGAGAGAGTCGGATATTTTCCGATTAACTG
AAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCCAGGAAAAAAGGCTTACGTGAGAGA
TATCTGGGAGGAGACACATTGGCCCTCCTTCTTCCTCGCCCTCCGGGTGTCTTGATTTCT
TCTTCTAACTCGTAGGCCGGGAGCAGTCCAAAATAGTTCGCCGTTGATGCAGCCGCCAGG
CAGTAGAGGGATTGGGGAATTGGATTCCATGTCAGCGCCATCGCTGATTTTACCAATTAC
TCGGTTAGAAAAACACACCTTCGTCCTTCTATAGAGC
Forward: ATTCTTCGCAATCGCCTG
Reverse: TCCCCAATCCCTCTACTGC
Reverse 2: AAGAAGGAGGGCCAATGTGT
SSR motif:(AG)15
Annealing temperature: 55°C
Observed alleles: 3
Expected size: 306
Chromosome LDN substitution line analysis: not locateded
Comments: Polimorphic between Messapia and MG4343: mapped on 6BS (completely linked to Gli-B2); the MG4343 allele is more than 100 bp bigger than the Messapia one.
gpw93022
AGAAAACTTCAATGGGAAAACTCAATTCATCAAGAAGATAGAGAGGGGAAAAACTCCATA
TGATTCATCTATGTCAACAAAGACCGCGTTACATCAAGATCGTTCCATCTCAAGAACACG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATACAACA
CATACCCTCGGCCCCGAGGGAGGACTACTCCCTCCTCATCATGGTGGCTGCCGGGATGAT
GAAGCTGTCCACCGGTGATGATCCCCCCCTCCGGCGGAGTGCCGGAGAAGGGCTCTAGAT
N
Forward: CAAAGACCGCGTTACATCAA
Reverse: CCGGTGGACAGCTTCATC
SSR motif:(GA)27
Annealing temperature: 60°C
Observed alleles: 1
Expected size: 178
Chromosome LDN substitution line analysis: Unlocated
Comments: Monomorphic in the 12 varieties screened.
gpw93025
AAATCATGTTATGTTGATACAAAGCACAAAATATTTTGCGCAGATAAAAGGCAGGTTCGT
GGCAGAGCCGTAGAAGACGGCAATGTACGTAACTGCCGTATGGCGAGTGTTACAGAAGAT
CCTGCTGTGTAGGCGAGTGTGTGTGAGCCTGAGCCAGTGATCCCTCCCCCGGGTTTTCTC
CTTTTTTACATTCTCTTCTCCACTTTCCCTTTTGCCTTGTCAAAACCCTATAAATGGCGT
CCCAGTCCCCCCCCCCCAAACCCCCCGAATCCCACCTAGCTCATCCGCGCTTCTCTCTCT
CTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTACATCTACCTTGGATCCTCCAC
Forward: AGACGGCAATGTACGTAA
Reverse: AGGATCCAAGGTAGATGTAG
SSR motif:(TC)13 CC (TC)3
Annealing temperature: 60°C
Expected size: 276 bp
Observed alleles: 2
Chromosome LDN substitution line analysis: lower band 4A, higher band unlocated, but my LDN 4D(4B) could be not working.
Comments: monomorphic between Messapia and MG4343, not mapped.
gpw94003
tgtcaactacgtacgtttgagcggcgagtaaccttcgtcacgccaaagagggtttgtgat
ttaagatttcaaatgaagccaacatggtcagttttgtgttttgctagattttactcgttg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtatctgcttggtacttaaagca
tgcgtgcccggaaatgtaggtaatgaccatggaggtttggcgcagcatacagtagaaagg
gcccgctttggtgatcctcgcatcttccacgaggtgcattacatgtgtgacagggagaaa
ggagtggtattggaggagagtgtagtgatggctccctaaacctcacggttcatgttcctc
attgcaaatttgcaattagagcatctatagcaagagacaacaaattcaggccctcaaacg
cccgcggacacgtctcatttgttggctaaccgcgtctctcatatacgaaacctcaaaact
attcaatccatgcaacgctacgtaaaa
Forward: AGTAACCTTCGTCACGCCAA
Reverse: CACTCTCCTCCAATACCACTCC
SSR motif:(TG)18
Annealing temperature: 60°C
Observed alleles: 5-6 (including nulli)
Expected size: 296 bp
Chromosome LDN substitution line analysis: higher band (the polimorphic one) 3B, lower band on 3A. No additional D band were observed.
Comments: Monomorphic between RIL parental lines.
gpw95008
cgttgtgtatacatgagagaacggtcttctattttacttgtgtgtgtgtgtgtgagagag
agagagagggagcatccgtaacacaacaaccatctctcttgattcgtccgtccctcgtac
tatcgcatgtaacacatgcatcaacgcacacattttgacaccctcacccggcccctgccc
acctcaaggcccgcacatcgctctctatctcgcacgcacaatctcttcatgaaaacccta
tttagcatgtagctttccgtgacatacacacacatttctctccataggtttgatttctct
caatatctgacacacacacacacaccacacacacaaaccccctcccctgagcacacaatt
catccccatccaaggttatatggcgaccactctcacttgtgcttctctgc
Forward: TAACACAACAACCATCTCTC
Forward 2: CATGAGAGAACGGTCTTCTATTTTAC
Reverse: GAGTGGTCGCCATATAAC
SSR motifs:(TG)8 (AG)7 and (AC)4… (AC)8 C (AC)4
Annealing temperature: 60°C
Observed alleles: 1
Expected size: Fow2-Rev 381 bp; Fow-Rev 314 bp
Chromosome NT analysis: unlocated
Comments: Very strong amplification with Fow2-Rev (following photo), but smaller sizes than expected (<200 bp). Strong background with Fow-Rev.
gpw95014
atgtagaaaataacataggtaggtgaaaaaactgaaagcgtaaattcacagcaagaagcg
tattgtgacggtgaacccgacaaagtcaatccgtgctttattattagggatagactagga
aaagagccagtgcgttgcaacggaagaaaaacataacacacgctcttaacccaacaacca
tcactcaataggcccatcttttttatttttgcgaggcatcatatttgtgttgccgcttat
cctccttctcaccctcgccggcgatggcctcggtgttcacacaaaacaacaaaaaacgtg
tttgaatatggttaatcctaaggcgtctctctctccctctctcctccctcgccctctctc
tctctctctctcactttctctcactctcgcgatgagaaatctattgttttcccctgcgac
atttttcagaggtatgcatgtgtag
Forward: atttgtgttgccgcttatcc
Reverse: TGCATACCTCTGAAAAATGTCG
SSR motif:(TC)5 CC (TC)3… (TC)9
Annealing temperature: 60°C
Observed alleles:
Expected size: 216
Chromosome LDN substitution line analysis: 1A
Comments:.The amplified fragment is bigger than expected (>400 bp), probably because of intron presence on genomic DNA. Due to the size, it was difficult to read the electrophoretic pattern.
Lines essayed:
- T. aestivum (Chinese Spring)
- T. turgidum durum (Langdon)
- T. turgidum durum (Messapia)
- T. dicoccoides (MG4343)
- T. turgidum durum (Creso)
- T. turgidum durum (Latino)
- T. turgidum durum (Primadur)
- T. turgidum dicoccum (MG5323)
- T. turgidum dicoccoides (MG29896)
- T. turgidum durum (Duilio)
- T. turgidum durum (breeding line)
- Triticale (Rhino)
In bold the parental lines of 65 RIL (Blanco et al. 1998: Theor Appl Genet 97:721-728).