GrainGenes | A Database for Triticeae and Avena

AWN Vol 43: awn43f3.html

VII. CATALOG OF GENE SYMBOLS FOR WHEAT

1997 Supplement

R.A. McIntosh¹, G.E. Hart²,K.M. Devos³ and M.D. Gale³

¹Plant Breeding Institute, The University of Sydney, 107 Cobbitty Rd., Cobbitty, N.S.W., Australia, 2570.

²Department of Soil & Crop Sciences, Texas A&M University, College Station, Texas, USA, 77843.

³John Innes Centre, Norwich Research Park, Colney, Norwich, Norfolk, NR4 7UH, UK.

The most recent edition of the Catalogue (9441) appears in the Proceedings of the 8th International Wheat Genetics Symposium held in Beijing, China, 1993, pp. 1333-1500. Revised Guidelines for Nomenclature of Biochemical/Molecular Loci (including QTLs) in Wheat and Related Species were included with the 1994 Supplement. Further proposals were included in the 1995 and 1996 Supplements.

This Supplement has been offered to the editors of Annual Wheat Newsletter and Wheat Information Service for inclusion in the respective journals.

As the Catalogue evolves, the co-ordinators do not always make appropriate changes to past entries. Researchers and readers are encouraged to advise updatings and errors to make the Catalogue more useful to others. This is now particularly important as a complete review of the Catalogue is planned for 1998.

Additions and revisions to symbols list ('Summary Table 1' in the 1995 Catalogue of Gene Symbols for Wheat):

Ald Chloroplastic aldolase

Alt Aluminum tolerance

bh Branched spike

Caa Carbonic anhydrase

Cat0 Catalase isozyme 1

Cdu Cadmium uptake: low cadmium uptake

Cyc Cyclophilin

Fbpa Fructose bisphospatase aldolase

Fedr Ferredoxin NADP⁺ reductase

Gapd3 Glyceraldehyde-3-phosphate dehydrogenase

GapA Cytosolic mRNA of chloroplast glyceraldehyde-3-phosphate dehydrogenase

Gdd P subunit of glycine decarboxylase multi-enzyme complex

Glp3 Germin-like protein 3

Gpc Grain protein content

Hmgp High mobility group protein

Hrp NAPH-dependent hydroxypyruvate reductase

Hsp70 Heat shock protein 70

Hsp82 Heat shock protein 82

Lhcb1 Light harvesting chlorophyl a/b binding protein

Lhcb3 Light harvesting complex for type III LHCII CAB precursor protein

Lhcb4 Chlorophyl a/b-binding protein (Lhcb4 gene)

Lhcb5 CP29 precursor for core chlorophyll a/b binding protein of PS II

L13 Chloroplast ribosomal protein L13

Pgk1-1 Replaces 'Pgk1'

Pgk2-1 Replaces `Pgk2'

Pp P protein

Prk Ribulose-5-phosphate kinase

Psah 10.2 kDa PS I polypeptide

Psk-1 Chloroplast photosytem I PSK-I subunit

PuiA Puroindoline-a

Rbca Rubisco activase

Sam S-adenosylmethionine decarboxylase

Sdh Succinate dehydrogenase

Sgp Starch granule protein

Tel Telomere

Tsc Reaction to Pyrenophora tritici-repentis: resistance to chlorosis induction

Xdh Xanthine dehydrogenase

17kD 17 kDa protein

60S 60S ribosomal protein

Additions to Laboratory Designators List

scs (S. cereale SSRs) wmc (wheatmicrosatellites)

Gustafson, P. Isaac, Peter G.
Dept. of Agronomy Agrogene 208 Curtis Hall 620 rue Blaise Pascal
University of Missouri-Columbia Z.I. 77550
Columbia, Missouri 65211 Moissy Cramayel
USA France

Gross Morphology

Spelt

Q was physically mapped in 5AL to fraction length 0.87, bracketed by deletions 5AL-7 and 5AL-23 (9756).

Branched spike

Synonymns: branched head, four-rowed spike, supernumerary spikelet, tetrastichon spikelet.

bh (9701). 2AS (9701). dv: PI 349056 (9701).

Elongated Glume (Revised section)

Elongated glume is the phenotype associated with the polonicum group of tetraploid wheats. Expression in hexaploid wheat is much reduced compared with tetraploids. Matsumura (9537) reported linkage of gene P and a gene for red coleoptiles implicating chromosomes 7A or 7B.

P (9537). Eg (9427). 7AL (9427; 9727). i: Saratovskaya29*8// Novsibirskaya 67*2/

T. polonicum (9427).

itv: P-LD222 = LD222*11/T. turgidum var polonicum (9538, 9727).

Aluminum Tolerance

Alt2 (9757). [Alt_BH(9758)].

4DL (9757). su: T. turgidum cv. Langdon 4D(4B) (9757).

ma: Alt2 was mapped to a 4 cM interval flanked by Xpsr914 and Xpsr1051 (9757) on a consensus 4B-4D map of T. aestivum.

ma: Alt2 and Xbcd1230 are linked by 1.1 cM (9758).

Anthocyanin Pigmentation

3. Red/purple coleoptiles

Add below the Rc3 section:

`ma: Rc3 was mapped 3 cM distal of Xpsr108 (140).'

4. Purple/red culm/straw/stem.

Add below the Pc1 section:

`ma: Pc was mapped 5.7 cM proximal of Xpsr490(Ss1)(9739)².'

Blue Aleurone

Add:

`4A^mL (96119)³.'

`The Ba allele in T. monococcum spp. aegilopoides acc. G3116 determines a half-blue seed phenotype and is different from the solid blue allele present in Elytrigia pontica (96119).'

`ma: Cosegregation was observed between Ba, Xcdo1387, Xmwg677 and Xbcd1092.'

Cadmium Uptake

Low Cadmium Uptake

Cdu1 (9705). Cdu1 (9704). dv: Biodur (9704); Hercules(9704); Nile (9704).

Cdu1 (9705). cdu 1 (9704). dv: Kyle (9704).

ma: Cdu1 - OPC-20 4.6cM (9704);

Cdu1 - UBC-180 21.2 cM (9704).

Chlorophyll Abnormalities

2. Chlorina

cn-A1d (9701). dv: CDd6 (9701, 9702).

cn-B1a (9701). dv: CDd1 (9701, 9702); CBC-CDd1 (9701).

cn-B1b (9701). dv: CDd2 (9701, 9702).

Crossability with Rye and Hordeum spp

kr1 kr2 v: Martonvarsari 9*4/Chinese Spring (9724).

Kr1 Kr2/Kr1 kr2 (heterogeneous). v: Martonvarsari 9 (9724).

Meiotic Characters

2. Pairing homoeologous

Ph1 was physically mapped in 5BL to fraction length 0.55, bracketed by deletions 5BL-1 and ph1b (9756).

DNA Markers:

Add at the end of the preamble:

'^a' Designates primer pairs that identify loci that cap the genetic maps. The forward primer is a degenerate telomeric sequence and the reverse primer is a specific sequence. Each primer combination identified multiple loci; however, only telomeric (Tel) loci are included (9742).'

`^b` Designates loci whose functions were identified through homology with known genes in the EMBL database (9754).'

STS's from RFLP clones: Several new STS markers are listed this year using sequences from previously listed RFLP clones. The convention adopted is to add a `p' to the later descriptor. The 'References' to PCR markers refer, however, to the paper(s) that reported the first chromosomal location detected by this PCR marker.

Group 1S

Revise:

Xcdo388; Add '5D' in the last column.

Xpsr161-1A,B,D; Replace with `Xpsr161(Hsp70)-1A,B,D [950]^b ' and add `[Xpsr161-1A,B,D (950)].' in second column.

Xpsr168-1A,B,D; Replace with `Xpsr168(Hmgp)-1A,B,D [1130,1129]^b ' and add `[Xpsr168-1A,B,D (1130,1129)].' in second column.

Add:

Xpsp2530(Tel)-1B.1 (9742). T4/PSP2530R^a.

Xpsp3003-1A (9741, 9743). PSP3003F/PSP3003R.(7D).

Xpsp3027-1A (9741, 9743). PSP3027F/PSP3027R.

Xpsp3151-1A (9741, 9743). PSP3151F/PSP3151R.

Xwms30-1A (9736). WMS30F/WMS30R.

Xwms33-1A (9736). WMS33F/WMS33R.

Group 1L

Revise:

Xbcd508; Add '5D' in the last column.

Xpsr159-1A,B,D; Replace with `Xpsr159(Psah)-1A,B,D [1130, 1129]^b.' and add `[Xpsr159-1A,B,D (1130, 1129)].' in second column.

Xpsr462(Pgk1)-1A,B,D; Replace with `Xpsr462(Pgk1-1)-1A,B,D [138].' and add `[Xpsr462(Pgk1)-1A,B,D].' to second column.

Add:

Xpsp3100-1B (9741, 9743). PSP3100F/PSP3100R.

Xpsp3137-1D (9741, 9743). PSP3137F/PSP3137R.

Xpsp3139-1D (9743). PSP3139F/PSP3139R.

Xpsr172(Lhcb1)-1A (9754). PSR172. (5A,B,D, 7A,B,D).

Xwms11-1B (9736). WMS11F/WMS11R.

Xwms24-1B (9736). WMS24F/WMS24R.

Xwms33-1B (9736). WMS33F/WMS33R.

Group 1

Add:

XGluTR-1A,B,D (9735). BHA87.

Xabcp158-1D (9744). ABC158F/ABC158R. (3D, 6D).

Xabcp253-1A (9744). BC253F/ABC253R. (3B, 4B,D).

Xabgp358-1A (9744). ABG358F/ABG358R.

Xabgp712-1A (9744). ABG712F/ABG712R. (2A,B,D).

Xcdop312-1A (9744). CDO213F/CDO213R. (4B, 7D).

Xcdop673-1A (9744). CDO673F/CDO673R.

XksupD15-1D (9744). KSUD15F/KSUD15R. (5B,D, 7B,D).

XksupM148-1B (9744). KSUM148F/KSUM148R. (2A, 4B,D, 6B).

Xpsp3004-1D (9741). PSP3004F/PSP3004R.

Xpsp3136-1A (9741). PSP3136F/PSP3136R.

Group 2S

Revise:

Xpsr100-2A,B,D; Replace with `Xpsr100(60S)-2A,B,D [186]^b.' and add `[Xpsr100-2A,B,D (186)].' in second column.

Xpsr107-2A,B,D; Replace with `Xpsr107(Lhcb4)-2A,B,D [186]^b.'and add `[Xpsr107-2A,B,D (186)].' in second column.

Xpsr108-2A,B,D; Replace with `Xpsr108(Glp3)-2A,B,D [952, 9547]^b.' and add `[Xpsr108-2A,B,D (952, 9547)].' in second column.

Xpsr135-2A,B,D; Replace with `Xpsr135(17kD)-2A,B,D [950, 186]^b.' and add `[Xpsr135-2A,B,D (950, 186)].' in second column.

Xpsr143-2A; Replace with `Xpsr143(Lhcb3)-2A [186]^b.'and add `[Xpsr143-2A (186)].' in second column.

Xpsr150-2A,B,D; Replace with `Xpsr150(Hsp82)-5A,B,D [186]^b.' and add `[Xpsr150-2A,B,D (186)].' in second column.

Add:

Xpsp2152(Tel)-2D.1 (9742). T4/PSP2152R^a.

Xpsp2152(Tel)-2B.10 (9742). PSP2159F/PSP2152R^a.

Xpsr2152(Tel)-2D.1 (9742). PSR2152. (3B).

Xpsp3058-2D (9743). PSP3058F/PSP3058R. (4A, 6D).

Xpsp3142-2A (9743). PSP3142/PSP3142R. (4A).

Xpsp3153-2A (9741,9743). PSP3153/PSP3153R.

Xwms10-2A (9736). WMS10F/WMS10R.

Group 2L

Revise:

Xcdo388: Add '5D' in the last column.

XksuF1: Add '2B,D' to the last column entry.

Xpsr101-2A,B,D; Replace with `Xpsr101(Psk-1)-2A,B,D [950]^b.' and add `[Xpsr101-2A,B,D (950, 9754)].' in second column.

Xpsr102-2A,B,D; Replace with `Xpsr102(Sam)-2A,B,D [952, 186]^b.'and add `[Xpsr102-2A,B,D (952, 186)].' in second column.

Xpsr151-2A,B,D; Replace with `Xpsr151(GapA)-2A,B,D [186]^b.' and add `[Xpsr151-2A,B,D (186).' in second column.

Add:

Xglkp605-2B (9738). AWP1-U,AWP2-U,AWP3-U/

AWP1-L,AWP2-L,AWP3-L.

Xpsp2151(Tel)-2A.3 (9742). PSP2159F/PSP2151R^a.

Xpsp3029-2A (9743). PSP3029F/PSP3029R. (6AS,AL).

Xpsp3034-2B (9743). PSP3034F/PSP3034R. (7B).

Xpsp3039-2A (9743). PSP3039F/PSP3039R.

Xpsp3088-2A (9741,9743). PSP3088F/PSP3088R.

Xwms10-2B (9736). WMS10F/WMS10R.

Xwms30-2D (9736). WMS30F/WMS30R.

Group 2

Revise:

Xglk222-2D; Add '(5B).' in the last column.

Xpsr148-2A,B,D; Replace with `Xpsr148(Cat0)-2A,B,D [27]^b.' and add `[Xpsr148-2A,B,D (274)].' in second column.

Add:

Xabgp58-2B (9744). BG058F/ABG058R. (5B, 7B).

Xabgp317-2D (9744). ABG317F/ABG317R.

Xabgp602-2B,D (9744). ABG602F/ABG602R.

Xabgp712-2A,B,D (9744). BG712F/ABG712R. (1A).

Xbcdp129-2B (9744). BCD129F/BCD129R.

Xbcdp175-2B,D (9744). BCD175F/BCD175R.

XksupE8-2B (9744). SUE8F/KSUE8R. (4D, 6B, 7D).

XksupF15-2A,B (9744). SUF15F/KSUF15R. (3A, 6A,B,D).

XksupG12-2B,D (9744). KSUG12F/KSUG12R.

XksupM148-2A (9744). SUM148F/KSUM148R. (1B, 4B,D, 6B).

Xpsp3023-2A (9741). PSP3023F/PSP3023R.

Xpsp3030-2B (9741,9743). SP3030F/PSP3030R. (3B, 4B).

Xwms47-2 (9736). WMS47F/WMS47R.
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