*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2013-SxW-RGA
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2013-SxW-RGA_AswBF
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2013-SxW-RGA [ View Map Set Info ]
Map Name: Oat-2013-SxW-RGA_AswBF
Map Start: 0 cM
Map Stop: 199 cM
Features by Type:
74 locus
74 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 74.       of 3 | Next
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswBF
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
isu1442 locus 0 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU1442 locus 268.5 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF isu1442 locus 0 (cM) Automated name-based View Maps
RsaI/PK4R1b_E locus 7 No other positions
AluI/PK4R1a_E locus 7 No other positions
RsaI/PK3Fa_H locus 7 No other positions
cdo520A locus 14 No other positions
bcd1549 locus 17 Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF bcd1549 locus 20 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd1549.1 locus 10.4 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-B BCD1549 locus 63.5 () Automated name-based View Maps
isu1876 locus 19 Diploid oat - Diploid Oat, AFLP - Avena-Yu-E Xisu1876 locus 44 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-B ISU1876 locus 58.6 () Automated name-based View Maps
isu1410 locus 21 Diploid oat - Diploid Oat, AFLP - Avena-Yu-A Xisu1410b locus 178.6 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-B ISU1410 locus 0 () Automated name-based View Maps
AluI/NBS2_A locus 23 No other positions
MseI/PK4R1b_C locus 23 No other positions
AluI/PK3Fa_D locus 23 No other positions
RsaI/PK4R1a_H locus 26 No other positions
HaeIII/PK3Fb_B locus 30 No other positions
RsaI/PK3Fa_A locus 30 No other positions
cisu127 locus 38 Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF cisu127 locus 40 (cM) Automated name-based View Maps
HaeIII/PK3Fb_K locus 38 No other positions
psr153 locus 41 Oat - Oat-2002-OxT-QTL - Oat-2002-OxT-QTL_1 psr153 locus 3 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 PSR153 locus 31 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 psr153 locus 2.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 PSR153 locus 31 () Automated name-based View Maps
HaeIII/PK3Fa_G locus 41 No other positions
isu1093 locus 44 Oat - Oat-2016-OxT - Oat-2016-OxT_6b ISU1093 locus 65 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-20 ISU1093 locus 31 () Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU1093 locus 339.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg20 ISU1093 locus 31 () Automated name-based View Maps
Oat - Oat, OxT - Oat-OxT-1 oisu1093 locus 4.4 () Automated name-based View Maps
cdo36 locus 46 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-2H CDO36 locus 155 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-7H CDO36 locus 55.1 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-4 CDO36 locus 11.4 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H CDO36 locus 202.54 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H CDO36 locus 151.4 () Automated name-based View Maps
Wheat S^l^ - Oat-2004-SxW-RGA - Oat-2004-SxW-RGA_AswBF cdo36 locus 47.18 (cM) Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H CDO036 locus 146.49 () Automated name-based View Maps
Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H CDO36 locus 146.26 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H CDO36 locus 265.69 () Automated name-based View Maps
rz421A locus 51 Sugarcane - Saccharum, Cornell - Saccharum-4 RZ421a locus 3.6 () Automated name-based View Maps
Sugarcane - Saccharum, CU/CIBR - Saccharum-CU/CIBR-4 RZ421a locus 42 () Automated name-based View Maps
isu2285 locus 58 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU2285 locus 318 () Automated name-based View Maps
isu1935 locus 62 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-E ISU1935 locus 297 () Automated name-based View Maps
RsaI/NBS3_D locus 62 No other positions
isu2204 locus 66 Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-B ISU2204 locus 102.7 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.