*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat-2016-KxO
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-2016-KxO_35
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat-2016-KxO [ View Map Set Info ]
Map Name: Oat-2016-KxO_35
Map Start: 0
Map Stop: 15.8
Features by Type:
17 locus
17 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 17 of 17.
Oat - Oat-2016-KxO - Oat-2016-KxO_35
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
aa12.1075 locus 15.8 Oat - Oat-2013-KxO-RGA - RGA-2013_KO30 aa12.1075 locus 25 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 aa12.1075 locus 104.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 aa12.1075 locus 104.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 aa12.1075 locus 24.8 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 AA12.1075 locus 109 (cM) Automated name-based View Maps
WG645 locus 7.9 Barley - Barley, Steptoe x Morex, SNP - Hordeum-StMo-SNP-2H WG645 locus 145.82 () Automated name-based View Maps
Barley - Barley, CxS - Hordeum-CxS-2H WG645 locus 209.77 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-2H WG645 locus 144 () Automated name-based View Maps
Barley - Barley consensus 2 - Barley-Consensus2-2H WG645 locus 148.8 () Automated name-based View Maps
Barley - Barley consensus 2003 - Barley-consensus-2003-2H WG645 locus 158.9 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 WG645 locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 WG645 locus 107 (cM) Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-2H WG645 locus 145.65 () Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xwg645 locus 166.6 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-2H WG645 locus 158.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-2H WG645 locus 147.66 () Automated name-based View Maps
Barley - Barley, GxH - Hordeum-GxH-2H WG645 locus 256.49 () Automated name-based View Maps
Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-2 WG645 locus 145.65 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 WG645 locus 104.5 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 WG645 locus 8.54 (cM) Automated name-based View Maps
Barley - Barley, Dicktoo x Morex - Hordeum-DxM-2H WG645 locus 210.3 () Automated name-based View Maps
Barley - Barley, CxH - Hordeum-CxH-2H WG645 locus 216.5 () Automated name-based View Maps
Barley - Barley, BinMap 2005 - Hordeum-Bins-2H WG645 locus 166.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 WG645 locus 11.2 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-2H WG645 locus 145.65 () Automated name-based View Maps
Barley - Barley consensus - Barley-Consensus-2H WG645 locus 75.7 () Automated name-based View Maps
UMN207B locus 7.9 Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn207b locus 12 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN207B locus 104.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN207B locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN207B locus 107 (cM) Automated name-based View Maps
CDO1335 locus 7.9 Barley - Barley consensus 2003 - Barley-consensus-2003-2H CDO1335A locus 108.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO1335 locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 CDO1335 locus 107 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 CDO1335 locus 12.2 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO1335 locus 104.5 () Automated name-based View Maps
avgbs_9974 locus 4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 avgbs_9974 locus 41.8 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 avgbs_9974 locus 41.8 () Automated name-based View Maps
GMI_ES_CC8433_371 locus 4 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES_CC8433_371 locus 41.8 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES_CC8433_371 locus 41.8 () Automated name-based View Maps
avgbs_109951 locus 4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 avgbs_109951 locus 104.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 avgbs_109951 locus 104.5 () Automated name-based View Maps
GMI_DS_LB_7493 locus 4 Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-9 GMI_DS_LB_7493 locus 34.51 (cM) Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 GMI_DS_LB_7493 locus 104.9 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 GMI_DS_LB_7493 locus 104.9 () Automated name-based View Maps
Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_DS_LB_7493 locus 11.54 (cM) Automated name-based View Maps
GMI_GBS_25278 locus 4 Oat - Oat-2017-U01BxU006 - Oat-2017-U01BxU006-5 GMI_GBS_25278 locus 9.13 (cM) Automated name-based View Maps
Oat - Oat-2017-UTauxU017 - Oat-2017-UTauxU017-9 GMI_GBS_25278 locus 29.04 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_GBS_25278 locus 41 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_GBS_25278 locus 41 () Automated name-based View Maps
GMI_ES15_c8463_378 locus 4 Oat - Oat-2016-Consensus - Oat-2016-Consensus-24 GMI_ES15_c8463_378 locus 41 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg24 GMI_ES15_c8463_378 locus 41 () Automated name-based View Maps
Oat - Avena_2013_SNP - Avena_2013_SNP_14D GMI_ES15_c8463 locus 45.98 () Automated name-based View Maps
CDO344 locus 2 Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 CDO344 locus 107 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo344 locus 55.3 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-12 CDO344 locus 28.4 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 CDO344 locus 104.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 CDO344 locus 11.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 CDO344 locus 104.5 () Automated name-based View Maps
UMN109 locus 2 Oat - Oat, KxO - Oat-KxO-30 Xumn109 locus 9.7 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN109 locus 107 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn109 locus 11.1 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN109 locus 104.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN109 locus 104.5 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 UMN109 locus 11.48 (cM) Automated name-based View Maps
UMN5109_2 locus 2 Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN5109_2 locus 107 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN5109_2 locus 104.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN5109_2 locus 104.5 () Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn5109_2 locus 12 () Automated name-based View Maps
UMN407 locus 2 Oat - Oat, KxO - Oat-KxO-30 Xumn407 locus 13.2 () Automated name-based View Maps
Oat - Oat-2013-KxO-RGA - RGA-2013_KO30 umn407 locus 15 (cM) Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN407 locus 114 (cM) Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN407 locus 104.5 () Automated name-based View Maps
Oat - Oat-2002-KxO_Pal - Oat-2002-KxO-Pal_30 UMN407 locus 23.5 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn407 locus 15.2 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN407 locus 104.5 () Automated name-based View Maps
UMN487 locus 2 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 UMN487 locus 104.5 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 UMN487 locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 UMN487 locus 107 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 umn487 locus 12.6 () Automated name-based View Maps
BCD1850 locus 0 Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 bcd1850 locus 11.7 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD1850 locus 104.5 () Automated name-based View Maps
Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD1850 locus 104.5 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-30 Xbcd1850 locus 2.9 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 BCD1850 locus 107 (cM) Automated name-based View Maps
BCD1851A locus 0 Oat - Oat-2018-Consensus - Oat-2018-Consensus_Mrg06 BCD1851A locus 104.5 () Automated name-based View Maps
Oat - Oat-2009-KxO - Oat-2009-KxO_5_30 BCD1851A locus 107 (cM) Automated name-based View Maps
Oat - Oat, KxO, 2003 - Oat-KxO/2003-30 bcd1851a locus 11.6 () Automated name-based View Maps
Oat - Oat-2016-Consensus - Oat-2016-Consensus-6 BCD1851A locus 104.5 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.