*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, P87 x P105
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-PxP-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, P87 x P105 [ View Map Set Info ]
Map Name: Secale-PxP-6
Map Start: 0
Map Stop: 114
Features by Type:
8 locus
8 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 8 of 8.
Rye - Rye, P87 x P105 - Secale-PxP-6
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xpsr149 locus 47.9 Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr149 locus 47.9 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6ABD Xpsr149 locus 86 () Automated name-based, Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr149 locus 75 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr149 locus 0 () Automated name-based View Maps
Xpsr627 locus 7.1 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D Xpsr627 locus 69 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr627 locus -58.1 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr627 locus 20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr627 locus 74 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr627 locus 68.2 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr627 locus 7.1 () Automated name-based View Maps
Xpsr160 locus 0 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr160 locus 63.1 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr160 locus 0 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr160 locus -95 () Automated name-based, Automated name-based View Maps
Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswAC Xpsr160 locus 14 (cM) Automated name-based View Maps
Xpsr312 locus 35 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr312 locus 67 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr312 locus 38.9 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr312 locus 35.1 () Automated name-based View Maps
Rye - Rye, UC90 x E-line - Secale-UxE-6 Xpsr312 locus 39 () Automated name-based View Maps
Centromere-R6 locus 38.5 Rye - Rye, Hannover - Secale-Wricke-6R Centromere-R6 locus 18.3 () Automated name-based View Maps
Xiag85 locus 42.2 Rye - Rye, Hannover - Secale-Wricke-7R Xiag85 locus 152.8 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xiag85 locus 42.2 () Automated name-based View Maps
Xpsr1203 locus 97.9 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr1203 locus 150.8 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr1203 locus 70 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr1203 locus 115 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr1203 locus 109.8 () Automated name-based View Maps
Xpsr687 locus 114 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xpsr687 locus 97 () Automated name-based, Automated name-based View Maps
Barley - Barley, BxGP - Hordeum-Laurie1-2H Xpsr687 locus 102.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-2R Xpsr687 locus 3.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-2R Xpsr687 locus 76.3 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10 - Secale-Devos-6R Xpsr687 locus 98.3 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr687 locus 91 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr687 locus 135.7 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-2R Xpsr687 locus 53.4 () Automated name-based View Maps
Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Xpsr687 locus 171.8 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.