NSFT03P2_Contig13397 with 5 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100) |
| BLAST results - best hit | | BLASTN | | accession | score | e-value | description | | NT_036355 | 543 | 1e-151 | Oryza sativa (japonica cultivar-group), chromosome 1, contig 1.5 | | BLASTX | | accession | score | e-value | description | | BAB32724 | 447 | 1e-124 | (AP002902) hypothetical protein~similar to Arabidopsis thaliana chromosome 1, F22C12.12 [Oryza sativa (japonica cultivar-group)] | |
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text |
|
| Assembly |
| members | links | range | assembly consensus = 1288bp ( '-' ~= 21bp) |
| Consensus | | 1-1288 | -----------------------------------------------------------> |
| CD490563 | | 1-764
| -----------------------------------> |
| BE516109 | | 63-441
| ------------------> |
| BQ579677 | | 535-1288
| <----------------------------------- |
| BE517275 | | 662-1253
| ---------------------------> |
| BQ579299 | | 719-1059
| <---------------- |
| -------------------- |
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
|
|
| Member library distribution | | library | members | description | | TA049E1X | 3 | T.aestivum / embryo / mature, dormant seeds |
| TA012XXX | 2 | T.aestivum / embryo / mature, dormant seeds |
|
