NSFT03P2_Contig14134 with 5 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100) |
| BLAST results - best hit | | BLASTN | | accession | score | e-value | description | | AY104050 | 609 | 1e-171 | Zea mays PCO088038 mRNA sequence | | BLASTX | | accession | score | e-value | description | | AAL37475 | 249 | 4e-65 | (AF329635) delta-12 fatty acid desaturase [Gossypium hirsutum] | |
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text |
|
| Assembly |
| members | links | range | assembly consensus = 895bp ( '-' ~= 15bp) |
| Consensus | | 1-895 | -----------------------------------------------------------> |
| BE517200 | | 1-527
| ----------------------------------> |
| CD454197 | | 17-605
| ----------------------------------------> |
| BE422451 | | 39-544
| ---------------------------------> |
| BM140433 | | 277-895
| <----------------------------------------- |
| BQ578828 | | 602-833
| <---------------- |
| -------------------- |
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
|
|
| Member library distribution | | library | members | description | | TA012XXX | 1 | T.aestivum / embryo / mature, dormant seeds |
| TA008E1X | 1 | T.aestivum / root / seedling |
| TA009XXX | 1 | T.aestivum / spike / mature plant |
| TA001E1X | 1 | T.aestivum / endosperm / 5-30 days post anthesis |
| TA019E1X | 1 | T.aestivum / spike / pre-anthesis |
|
