GrainGenes-SQL Query Resources: Contig Information [Instructions]

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NSFT03P2_Contig16802 with 9 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
Y0991514790T.aestivum mRNA for germin-like protein 1
BLASTX
accessionscoree-valuedescription
CAA745953131e-107(Y14203) oxalate oxidase [Hordeum vulgare]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 1017bp ( '-' ~= 17bp)
Consensus 1-1017----------------------------------------------------------->
BF201085 1-417
------------------------>
BE404124 9-553
-------------------------------->
CD373529 11-683
--------------------------------------->
BE406913 18-427
------------------------>
BE470547 31-557
 ------------------------------->
BE489689 193-668
          ---------------------------->
BE404592 421-1017
                        ----------------------------------->
BE490602[P]510-1007
                             <-----------------------------
BE517365 651-981
                                     -------------------->
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA008E1X3T.aestivum / root / seedling
TA007E1X2T.aestivum / seedling / 5-day old
TA012XXX1T.aestivum / embryo / mature, dormant seeds
TA006E2N1T.aestivum / shoot / seedling
TA016E1X1T.aestivum / crown / seedling
TA005E1X1T.aestivum / seedling / 5-day old