GrainGenes-SQL Query Resources: Contig Information [Instructions]

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NSFT03P2_Contig17868 with 14 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AP0034122504e-63Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1150F11
BLASTX
accessionscoree-valuedescription
BAB902544491e-125(AP003412) putative esterase D [Oryza sativa (japonica cultivar-group)]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 1171bp ( '-' ~= 20bp)
Consensus 1-1171----------------------------------------------------------->
BQ743213 1-728
------------------------------------>
BQ579689 1-749
------------------------------------->
BQ484011 14-797
---------------------------------------->
BE606249 24-611
------------------------------>
BQ789272 47-701
 ---------------------------------->
BE489996 165-726
       ----------------------------->
BF483299[P]184-750
        ----------------------------->
BF482895 199-553
         ------------------>
BF474518 298-664
              ------------------->
BE499450 425-891
                     ------------------------>
BE604701 596-1065
                              ------------------------>
BE591488 602-1153
                              ---------------------------->
BQ805782 689-1171
                                  ------------------------->
BQ803521 842-960
                                          ------>
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA019E1X3T.aestivum / spike / pre-anthesis
TA038E1X1T.aestivum / crown / seedling
TA059E1X1T.aestivum / whole grain / 3-44 days post anthesis
TA065E1X1T.aestivum / root / seedling
TA031E1X1T.aestivum / flag leaf / full tillering
TA049E1X1T.aestivum / embryo / mature, dormant seeds
TA007E1X1T.aestivum / seedling / 5-day old
TA058E1X1T.aestivum / root / full tillering
TA027E1X1T.aestivum / leaf / full tillering
TM046E1X1T.monococcum / shoot apex / 1-month old plants
TA066E1X1T.aestivum / root, leaf, crown, stem, sheath / mature plant
TA018E1X1T.aestivum / spike / post-anthesis