GrainGenes-SQL: Query Contig Information

GrainGenes-SQL Query Resources: Contig Information [Instructions]

NSFT03P2_Contig18023 with 16 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)

`BLAST results - best hit`
`BLASTN`
`accession`	`score`	`e-value`	`description`
`AY103615`	`862`	`0`	`Zea mays PCO148672 mRNA sequence`
`BLASTX`
`accession`	`score`	`e-value`	`description`
`BAB89667`	`662`	`0`	`(AP003262) putative transaldolase [Oryza sativa (japonica cultivar-group)]`

Other contig information consensus sequence in FASTA format -> click here graingenes-classic display -> graphic | text

`Assembly`
`members`	`links`	`range`	`assembly consensus = 1621bp ( '-' ~= 27bp)`
`Consensus`		`1-1621`	`----------------------------------------------------------->`
`BQ483567`		`1-515`	`------------------>`
`BM136453`		`14-501`	`------------------>`
`BQ838537`		`34-610`	`---------------------->`
`BM136097`		`119-497`	`-------------->`
`BQ753263`		`181-808`	`----------------------->`
`BF293081`		`183-837`	`------------------------>`
`BF293672`		`186-747`	`--------------------->`
`BF482670`		`319-968`	`------------------------>`
`WHE3885_F04_L07ZS`		`335-940`	`----------------------->`
`BE406670`		`604-845`	`--------->`
`BM135629`		`731-1293`	`--------------------->`
`CD453598`		`910-1621`	`<--------------------------`
`BF482857`		`974-1372`	`--------------->`
`BM137399`		`1081-1621`	`-------------------->`
`BE423604`		`1120-1572`	`<-----------------`
`BE516565`		`1139-1543`	`<---------------`
`--------------------`
`members legend bold = EST matching query string link legend P = EST probe plate information M = EST mapped loci information assembly legend red = EST is deletion mapped green = EST is mapping probe`

`Member library distribution`
`library`	`members`	`description`
`TA009XXX`	`5`	`T.aestivum / spike / mature plant`
`TA019E1X`	`2`	`T.aestivum / spike / pre-anthesis`
`TT039E1X`	`2`	`T.turgidum / all types / mature plant`
`TA048E1X`	`1`	`T.aestivum / root tip / 4-day old plants`
`TA008E1X`	`1`	`T.aestivum / root / seedling`
`TA065E1X`	`1`	`T.aestivum / root / seedling`
`TA058E1X`	`1`	`T.aestivum / root / full tillering`
`TA016E1X`	`1`	`T.aestivum / crown / seedling`
`TA001E1X`	`1`	`T.aestivum / endosperm / 5-30 days post anthesis`
`TA012XXX`	`1`	`T.aestivum / embryo / mature, dormant seeds`

start over	Query by Contig Name, Member Name, or Member accession	Query Type	Query Target
Search: