GrainGenes-SQL Query Resources: Contig Information [Instructions]

start over Query by Contig Name, Member Name, or Member accession Query Type Query Target  
Search:

Query Results

NSFT03P2_Contig18294 with 19 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
NT_0363526660Oryza sativa (japonica cultivar-group), chromosome 1, contig 1.47
BLASTX
accessionscoree-valuedescription
BAB638334271e-118(AP003627) putative tonoplast membrane integral protein [Oryza sativa (japonica cultivar-group)]
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 1084bp ( '-' ~= 18bp)
Consensus 1-1084----------------------------------------------------------->
BE515410 1-1
>
BQ483854 1-531
---------------------------->
WHE3954_D01_H02ZS 4-512
--------------------------->
BE425929 13-403
--------------------->
BU100402 17-529
---------------------------->
BQ752917 17-637
---------------------------------->
BU099534 25-471
------------------------->
BQ743415 28-237
 ----------->
BM135249 108-544
     ------------------------>
BE516659 112-119
     ->
BQ837989 199-877
          -------------------------------------->
BQ838063 206-984
          ------------------------------------------->
BU099832 236-243
            >
BF484758[P]315-326
                ->
BQ295434 315-326
                ->
WHE2641_D07_G13ZE 315-326
                ->
CD454471 315-326
                <-
BE404792 537-1084
                             ------------------------------>
BQ839426 810-1071
                                            <--------------
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
TA009XXX3T.aestivum / spike / mature plant
TA055E1X2T.aestivum / root / full tillering
TA019E1X2T.aestivum / spike / pre-anthesis
TA065E1X2T.aestivum / root / seedling
TA048E1X2T.aestivum / root tip / 4-day old plants
TA012XXX2T.aestivum / embryo / mature, dormant seeds
TA066E1X1T.aestivum / root, leaf, crown, stem, sheath / mature plant
TA008E1X1T.aestivum / root / seedling
TA058E1X1T.aestivum / root / full tillering
TA047E1X1T.aestivum / root tip / seedling
TA006E1X1T.aestivum / shoot / seedling
TA056E1X1T.aestivum / root tip / seedling