GrainGenes-SQL: Query Contig Information

GrainGenes-SQL Query Resources: Contig Information [Instructions]

NSFT03P2_Contig18570 with 27 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)

`BLAST results - best hit`
`BLASTN`
`accession`	`score`	`e-value`	`description`
`L11740`	`2133`	`0`	`Barley elongation factor 1 alpha, (EF-1A) mRNA sequence`
`BLASTX`
`accession`	`score`	`e-value`	`description`
`Q40034`	`864`	`0`	`Elongation factor 1-alpha (EF-1-alpha)`

Other contig information consensus sequence in FASTA format -> click here graingenes-classic display -> graphic | text

`Assembly`
`members`	`links`	`range`	`assembly consensus = 1682bp ( '-' ~= 28bp)`
`Consensus`		`1-1682`	`----------------------------------------------------------->`
`BQ167866`		`1-452`	`--------------->`
`BG275029`		`15-182`	`----->`
`BE517945`		`16-600`	`-------------------->`
`BE517363`		`28-576`	`-------------------->`
`BQ805268`		`205-807`	`---------------------->`
`BQ839441`		`230-900`	`------------------------>`
`BF203023`		`244-576`	`------------>`
`WHE3856_A09_A18ZS`		`257-696`	`---------------->`
`WHE3894_C05_F10ZS`		`328-1011`	`------------------------>`
`BE516053`		`352-722`	`------------->`
`CA497871`		`399-853`	`---------------->`
`BM135268`		`598-1035`	`---------------->`
`BE424733`		`609-739`	`---->`
`BQ294955`		`663-1219`	`------------------->`
`CA498599`		`708-1171`	`----------------->`
`BE516848`		`724-1329`	`--------------------->`
`BE637358`		`793-965`	`------>`
`BE405829`		`817-1313`	`------------------>`
`WHE3953_H02_P03ZS`		`867-1336`	`----------------->`
`CA498026`		`1035-1397`	`------------->`
`BI480534`		`1103-1660`	`<--------------------`
`CA497923`		`1112-1682`	`-------------------->`
`BE422893`		`1121-1657`	`<-------------------`
`BE438259`		`1153-1647`	`<------------------`
`BE424438`		`1220-1660`	`<---------------`
`BE424592`		`1247-1665`	`<---------------`
`BE424637`		`1284-1660`	`<-------------`
`--------------------`
`members legend bold = EST matching query string link legend P = EST probe plate information M = EST mapped loci information assembly legend red = EST is deletion mapped green = EST is mapping probe`

`Member library distribution`
`library`	`members`	`description`
`TA001E1X`	`7`	`T.aestivum / endosperm / 5-30 days post anthesis`
`TA009XXX`	`4`	`T.aestivum / spike / mature plant`
`TA054XXX`	`4`	`T.aestivum / anther / early meiotic stage`
`TA012XXX`	`3`	`T.aestivum / embryo / mature, dormant seeds`
`TA016E1X`	`1`	`T.aestivum / crown / seedling`
`TA059E1X`	`1`	`T.aestivum / whole grain / 3-44 days post anthesis`
`SC024E1X`	`1`	`S.cereale / anther / mature plant`
`TA048E1X`	`1`	`T.aestivum / root tip / 4-day old plants`
`TA019E1X`	`1`	`T.aestivum / spike / pre-anthesis`
`TA047E1X`	`1`	`T.aestivum / root tip / seedling`
`TA038E1X`	`1`	`T.aestivum / crown / seedling`
`TA066E1X`	`1`	`T.aestivum / root, leaf, crown, stem, sheath / mature plant`
`TA008E1X`	`1`	`T.aestivum / root / seedling`

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