GrainGenes-SQL Query Resources: Contig Information [Instructions]

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Query Results

NSFT03P2_Contig18588 with 27 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100)
BLAST results - best hit
BLASTN
accessionscoree-valuedescription
AB0112623619e-97Oryza sativa (japonica cultivar-group) mRNA for nuclear transport factor 2 (NTF2), complete cds
BLASTX
accessionscoree-valuedescription
Q9XJ542124e-54Nuclear transport factor 2 (NTF-2)
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text
Assembly
memberslinksrangeassembly  consensus = 792bp ( '-' ~= 13bp)
Consensus 1-792----------------------------------------------------------->
BQ841328 1-685
--------------------------------------------------->
BF474989 9-596
-------------------------------------------->
BU100421 26-770
 -------------------------------------------------------->
BQ578601 29-615
 --------------------------------------------->
WHE3891_G08_M15ZS 33-772
 -------------------------------------------------------->
BQ483506 34-620
  -------------------------------------------->
BQ295491 34-604
  ------------------------------------------->
BQ840734 34-726
  ---------------------------------------------------->
BQ807260 40-712
  --------------------------------------------------->
BQ841935 50-622
   ------------------------------------------->
BE405022 62-638
    ------------------------------------------->
BF291967 62-591
    ---------------------------------------->
BF291364 73-774
     ----------------------------------------------------->
BE500285 75-596
     --------------------------------------->
BE404326 75-701
     ----------------------------------------------->
BF292553 75-562
     ------------------------------------->
BF202727 76-420
     -------------------------->
BE499117 80-595
     --------------------------------------->
BF293362 97-557
      ----------------------------------->
BE604392 97-393
      ----------------------->
BE425206 97-426
      ------------------------->
BE516547 102-334
       <-----------------
BQ807088 109-792
       ---------------------------------------------------->
BQ841813 216-712
               -------------------------------------->
BE405122 224-620
                ------------------------------>
BE423155 250-726
                  <------------------------------------
BE497465 270-455
                   -------------->
--------------------
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
Member library distribution
librarymembersdescription
AS040E1X3A.speltoides / anther / premeiotic stage
TA019E1X3T.aestivum / spike / pre-anthesis
TA008E1X3T.aestivum / root / seedling
AS067E1X2A.speltoides / anther / early premeiotic stage
TA059E1X2T.aestivum / whole grain / 3-44 days post anthesis
TA049E1X2T.aestivum / embryo / mature, dormant seeds
TA006E1X2T.aestivum / shoot / seedling
TA001E1X1T.aestivum / endosperm / 5-30 days post anthesis
TA009XXX1T.aestivum / spike / mature plant
TT039E1X1T.turgidum / all types / mature plant
TA038E1X1T.aestivum / crown / seedling
TA058E1X1T.aestivum / root / full tillering
TA056E1X1T.aestivum / root tip / seedling
TA047E1X1T.aestivum / root tip / seedling
TA027E1X1T.aestivum / leaf / full tillering
TA015E1X1T.aestivum / seedling / 14-day old
TA012XXX1T.aestivum / embryo / mature, dormant seeds