NSFT03P2_Contig2928 with 2 members, assembled on 2003-01-08 using phrap
(phrap parameters: -penalty -5 -minmatch 50 -minscore 100) |
| BLAST results - best hit | | BLASTN | | accession | score | e-value | description | | NT_036357 | 145 | 1e-31 | Oryza sativa (japonica cultivar-group), chromosome 1, contig 1.51 | | BLASTX | | accession | score | e-value | description | | BAB60938 | 422 | 1e-117 | (AP003578) putative pM5 collagenase [Oryza sativa (japonica cultivar-group)] | |
Other contig information
consensus sequence in FASTA format -> click here
graingenes-classic display -> graphic | text |
|
| Assembly |
| members | links | range | assembly consensus = 846bp ( '-' ~= 14bp) |
| Consensus | | 1-846 | -----------------------------------------------------------> |
| BQ281864 | | 1-670
| -----------------------------------------------> |
| BE445508 | [P] | 225-846
| --------------------------------------------> |
| -------------------- |
members legend
bold = EST matching query string
link legend
P = EST probe plate information
M = EST mapped loci information
assembly legend
red = EST is deletion mapped
green = EST is mapping probe
|
|
| Member library distribution | | library | members | description | | TA006E3N | 1 | T.aestivum / shoot / seedling |
| TA008E3N | 1 | T.aestivum / root / seedling |
|
