Query (optional)   in Class  

GrainGenes Locus Report: POPA2_0502

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_0502  [ Marker Report ]
Type
SNP
Synonym
Other name11_20502
BOPA1_11_20502
BOPA1_3220-723
Synonym11_20502
Chromosome
1H
Chromosome Arm
1HS
Map
Barley, 2012 9KSNP 1H4.1
Hordeum-OPA-2009-1H1.51
Hordeum-OPA123-2008-1H1.51
Hordeum-OPAConsensus-2011-1H2.55
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0314H10
Probe
HAR35_1696
i_11_20502
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_0502
Marker name in barley OPA1 = 11_20502
Original SNP name = 3220-723
Most representative HarvEST:Barley Assembly #32 Unigene = 3220
Most representative HarvEST:Barley Assembly #35 Unigene = 1696
HarvEST Unigene 35 Probe Set = Contig4537_at; Contig4537_s_at
Unigene 35 Rice Locus = LOC_Os05g01270
Marker name in barley Pilot OPA2 = 2_0502
HarvEST Unigene 35 Probe Set = Contig4537_at, Contig4537_s_at
Description for best rice BLAST hit to Unigene 35 member = protein peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed; E value = 1E-112
BLAST hit in the rice genome = peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed