Query (optional)   in Class  

GrainGenes Locus Report: POPA2_1494

[ Printable Version ]  [ Submit comment/correction ]

Locus
POPA2_1494  [ Marker Report ]
Type
SNP
Synonym
Synonym11_21494
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H79.6
Hordeum-OPA123-2008-7H79.6
Hordeum-OPAConsensus-2011-7H81.78
Hordeum-OWB-OPA2008-7H80.664
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Probe
HAR35_18723
Reference
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 2_1494
Marker name in barley OPA1 = 11_21494
Original SNP name = ABC10700-2-2-65
Most representative HarvEST:Barley Assembly #32 Unigene = 8038
Most representative HarvEST:Barley Assembly #35 Unigene = 18723
HarvEST Unigene 35 Probe Set = Contig10700_at
Unigene 35 Rice Locus = LOC_Os01g09830
Description for best rice BLAST hit to Unigene 35 member = OsGrx_A2 - glutaredoxin subgroup III, expressed; E value = 7E-46
Marker name in barley Pilot OPA2 = 2_1494
Description for best rice BLAST hit to Unigene 35 member = protein OsGrx_A2 - glutaredoxin subgroup III, expressed; E value = 7E-46
BLAST hit in the rice genome = OsGrx_A2 - glutaredoxin subgroup III, expressed