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GrainGenes Locus Report: POPA3_0257

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Locus
POPA3_0257  [ Marker Report ]
Type
SNP
Synonym
Other name12_30257
BOPA2_12_30257
Synonym12_30257
Chromosome
1H
Chromosome Arm
1HL
Map
Hordeum-OPA-2009-1H117.8
Hordeum-OPA123-2008-1H117.8
Hordeum-OPAConsensus-2011-1H119.78
Hordeum-OWB-OPA2008-1H129.791
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Barley, OWB, OPA2008
Species
Hordeum vulgare
Sequence
HVVMRXALLhA0451O08
Probe
HAR35_6224
i_12_30257
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 3_0257
Marker name in barley OPA1 = 12_30257
Original SNP name = ABC16431_1_600
Most representative HarvEST:Barley Assembly #32 Unigene = 12785
Most representative HarvEST:Barley Assembly #35 Unigene = 6224
HarvEST Unigene 35 Probe Set = Contig16431_at
Unigene 35 Rice Locus = LOC_Os05g48160
Description for best rice BLAST hit to Unigene 35 member = electron carrier/ electron transporter/ iron ion binding protein, putative, expressed; E value = 4E-67
Marker name in barley Pilot OPA3 = 3_0257
Marker name in barley OPA2 = 12_30257
Description for best rice BLAST hit to Unigene 35 member = protein electron carrier/ electron transporter/ iron ion binding protein, putative, expressed; E value = 4E-67
BLAST hit in the rice genome = electron carrier/ electron transporter/ iron ion binding protein, putative, expressed