GrainGenes

GrainGenes Locus Report: POPA3_0274

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Locus	POPA3_0274  [ Marker Report ]
Type	SNP
Probe	HAR35_10272 i_12_30274
Synonym	Other name 12_30274 BOPA2_12_30274 Synonym 12_30274
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 107.8 Hordeum-OPA-2009-3H 124.84 Hordeum-OPA123-2008-3H 124.84 Hordeum-OPAConsensus-2011-3H 133.36 Hordeum-OWB-OPA2008-3H 144.88
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 3_0274 Marker name in barley OPA1 = 12_30274 Original SNP name = ABC19616_1_756 Most representative HarvEST:Barley Assembly #32 Unigene = 18074 Most representative HarvEST:Barley Assembly #35 Unigene = 10272 HarvEST Unigene 35 Probe Set = Contig19616_at Unigene 35 Rice Locus = LOC_Os01g66860 Description for best rice BLAST hit to Unigene 35 member = ankyrin-kinase, putative, expressed; E value = 6E-99 Marker name in barley Pilot OPA3 = 3_0274 Marker name in barley OPA2 = 12_30274 Description for best rice BLAST hit to Unigene 35 member = protein ankyrin-kinase, putative, expressed; E value = 6E-99 BLAST hit in the rice genome = ankyrin-kinase, putative, expressed

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