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GrainGenes Marker Report: WMC219

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Probe
WMC219
Locus
Xwmc219-4A
[ Show all 7 ]
Reference
ReferenceSomers DJ and Isaac P (2004) SSRs from the Wheat Microsatellite Consortium.
Remarks
Wheat Microsatellite Consortium Project 1, Plate reference 11b9
Donor: Benoist
AGR205.18. Overlap of forward and reverse is hypothetical - both end within a substantial micorsatellite. The fragment sizes for the PCR from this sequence will not match the expected size. Trimmed to Rsa1 at both ends. (CA)57 316 to 429.
Type
PCR
SSR
PCR primers
Forward TgcTAgTTTgTcATccgggcgA at 264 length 22 bases, Tm 71
Reverse cAATcccgTTcTAcAAgTTccA at 446 length 22 bases, Tm 63
SSR size
~204 bases expected, Chinese Spring
Amplification Conditions
61C anneal, polymorphic product on agarose; 61C anneal, polymorphic on acrylamide;
Sequence
WMC219
Source Species
Triticum aestivum
Data Source
Somers, Daryl J.2004.06
Isaac, Peter G.2004.06



Locus for Probe
wmc219
Type
Microsatellite
Map
Durum Wheat, NSGC Lr 4A165.2
Wheat, Yr genes and QTL 4A85.7
Wheat-2014-Consensus-Ug99-Update_4A103.2
Wheat_Consensus_2014_Ug99_Rust_4A103.2
[ Show Nearby Loci ]
In QTL
QTw-IDuWUE-4A.4
Map Data
Durum Wheat, NSGC Lr
Wheat, Yr genes and QTL
Wheat-2014-Consensus-Ug99-Update
Wheat_Consensus_2014_Ug99_Rust
Probe
WMC219
Possible Orthologs
Xwmc219
Xwmc219-4A
wmc219-4A



Locus for Probe
Yr60
Chromosome
4A
Chromosome Arm
4AL
Map
Wheat, Yr genes and QTL 4A83.3
[ Show Nearby Loci ]
Map Data
Wheat, Yr genes and QTL
Probe
WMC219
WMC313
WMC776
Associated Gene
Yr60 (Triticum)
Gene Class
Reaction to Puccinia striiformis Westend.
Reference
ReferenceHerrera-Foessel SA et al. (2015) Yr60, a gene conferring moderate resistance to stripe rust in wheat Plant Disease 99:508-511.
ReferenceMAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Stripe Rust Resistance. Yr60 MAS Wheat. Marker Assisted Selection in Wheat.



Locus for Probe
SrND643
Type
Gene
Chromosome
4A
Chromosome Arm
4AL
Map
Wheat-2014-Consensus-Ug99-Update_4A73
[ Show Nearby Loci ]
Map Data
Wheat-2014-Consensus-Ug99-Update
Probe
WMC219
Associated Gene
SrND643 (Triticum)
Gene Class
Reaction to Puccinia graminis Pers.
Reference
ReferenceBasnet BR et al. (2015) Molecular mapping and validation of SrND643: A new wheat gene for resistance to the stem rust pathogen Ug99 race group Phytopathology 105:470-476.
ReferenceYu L et al. (2014) A consensus map for Ug99 stem rust resistance loci in wheat. Theoretical and Applied Genetics 127:1561-1581.
ReferenceMAS Wheat. Bringing Genomics to the Wheat Fields. Disease Resistance. Leaf rust. SrND643 MAS Wheat. Marker Assisted Selection in Wheat.
Remark
The location on the 2014 Ug99 Consensus Map is approximate.



Locus for Probe
wmc219-4A
Type
Microsatellite
Map
Wheat_AB, Colosseo x Lloyd 4A_268.6
Wheat_AB, Kofa x Svevo 4A_258.4
Wheat_AB, Kofa x UC1113 4A_221.8
Wheat_AB, Simeto x Levante 4A_386.4
Wheat_AB_2015_Consensus-4A165.2
[ Show Nearby Loci ]
Map Data
Wheat_AB, Colosseo x Lloyd
Wheat_AB, Kofa x Svevo
Wheat_AB, Kofa x UC1113
Wheat_AB, Simeto x Levante
Wheat_AB_2015_Consensus
Probe
WMC219
Possible Orthologs
Xwmc219
Xwmc219-4A
wmc219



Locus for Probe
Stb12
Type
Trait
Chromosome
4A
Chromosome Arm
4AL
Map
Wheat-Composite2004-4A140
[ Show Nearby Loci ]
Species
Triticum aestivum
Probe
WMC219
Associated Gene
Stb12 (Triticum)
Gene Class
Reaction to Mycosphaerella graminicola (Fuckel) Schroeter
Reference
ReferenceChartrain L et al. (2005) Resistance of wheat line Kavkaz-K4500 l.6.A.4 to Septoria triici blotch controlled by isolate-specific resistance genes. Phytopathology 95:664-671.
Remark
Trait marker Xwmc219-4A
Nearby marker on Composite map: Xwmc219
Position on Composite map estimated by GrainGenes.



Locus for Probe
Xwmc219
Type
Microsatellite
Chromosome
4A
Map
Svevo/Ciccio-4A114
Ta-NxW-4A161.6
Wheat-Composite2004-4A140
[ Show Nearby Loci ]
Breakpoint Interval
4AL4-0.80-1.00
Map Data
Durum wheat, Svevo x Ciccio
Wheat, Composite, 2004
Wheat, Nanda2419 x Wangshuibai
Probe
WMC219
Possible Orthologs
Xwmc219-4A
wmc219
wmc219-4A



Locus for Probe
Xwmc219-4A
Type
Microsatellite
Chromosome
4A
Chromosome Arm
4AL
Map
CS/SQ1-4A34.9
Kofa/UC1113-4A126.2
Ta-SSR-2004-4A87.6
Ta-Synthetic/Opata-SSR2-4A160.7
USG3209/Jaypee-4A29.4
[ Show Nearby Loci ]
Map Data
Durum wheat, Kofa x UC1113
[ Show all 6 ]
Probe
WMC219
Reference
ReferenceSomers DJ et al. (2004) A high-density wheat microsatellite consensus map for bread wheat (Triticum aestivum L.) Theoretical and Applied Genetics 109:1105-1114.
Possible Orthologs
Xwmc219
wmc219
wmc219-4A

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