Query (optional)   in Class  

GrainGenes Reference Report: TAG-118-793

[ Printable Version ]  [ Submit comment/correction ]

Reference
TAG-118-793
Title
A consensus map of rye integrating mapping data from five mapping populations.
Journal
Theoretical and Applied Genetics
Year
2009
Volume
118
Pages
793-800
Author
Gustafson JP
Ma XF
Korzun V
Snape JW
Abstract
A consensus map of rye (Secale cereale L.) was constructed using JoinMap 2.0 based on mapping data from five different mapping populations, including 'UC90' x 'E-line', 'P87' x 'P105', 'I(0.1)-line' x 'I(0.1)-line', 'E-line' x 'R-line', and 'Ds2' x 'RxL10'. The integration of the five mapping populations resulted in a 779-cM map containing 501 markers with the number of markers per chromosome ranging from 57 on 1R to 86 on 4R. The linkage sizes ranged from 71.5 cM on 2R to 148.7 cM on 4R. A comparison of the individual maps to the consensus map revealed that the linear locus order was generally in good agreement between the various populations, but the 4R orientations were not consistent among the five individual maps. The 4R short arm and long arm assignments were switched between the two population maps involving the 'E-line' parent and the other three individual maps. Map comparisons also indicated that marker order variations exist among the five individual maps. However, the chromosome 5R showed very little marker order variation among the five maps. The consensus map not only integrated the linkage data from different maps, but also greatly increased the map resolution, thus, facilitating molecular breeding activities involving rye and triticale.
External Databases
http://dx.doi.org/doi:10.1007/s00122-008-0939-4
Locus
Xa_Amy_2
Xa_Amy1.1
Xa_Amy1.2
Xa20450
A5530
Map Data
Rye_2009_consensus