*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2011, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPAConsensus-2011-1H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2011, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPAConsensus-2011-1H
Map Start: 0
Map Stop: 143.2
Features by Type:
345 locus
345 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 51 to 75 of 345.       Previous | of 14 | Next
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-1H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0789 locus 114.06 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0789 locus 112.54 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0789 locus 112.54 () Automated name-based View Maps
POPA1_0798 locus 59.29 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0798 locus 57.3 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0798 locus 61.53 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0798 locus 61.53 () Automated name-based View Maps
POPA1_0814 locus 28.99 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0814 locus 35.45 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0814 locus 47.71 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0814 locus 35.45 () Automated name-based View Maps
POPA1_0830 locus 89.77 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0830 locus 88.23 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0830 locus 82.6 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0830 locus 88.23 () Automated name-based View Maps
POPA1_0833 locus 44.59 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0833 locus 52.46 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0833 locus 52.46 () Automated name-based View Maps
POPA1_0854 locus 119.78 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0854 locus 117.8 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0854 locus 117.8 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0854 locus 129.79 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0854 locus 111.8 () Automated name-based View Maps
POPA1_0873 locus 20.33 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0873 locus 20.89 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0873 locus 20.89 () Automated name-based View Maps
POPA1_0890 locus 76.92 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0890 locus 73.94 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0890 locus 73.94 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0890 locus 82.96 () Automated name-based View Maps
POPA1_0895 locus 0.89 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0895 locus 0.77 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0895 locus 0.77 () Automated name-based View Maps
POPA1_0903 locus 133.47 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_0903 locus 145.33 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0903 locus 129.64 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0903 locus 129.64 () Automated name-based View Maps
POPA1_0911 locus 121.8 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0911 locus 120.51 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0911 locus 120.51 () Automated name-based View Maps
POPA1_0933 locus 45.2 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0933 locus 50.6 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0933 locus 55.49 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0933 locus 55.49 () Automated name-based View Maps
POPA1_0957 locus 41.74 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_0957 locus 49.34 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_0957 locus 49.34 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0957 locus 47.5 () Automated name-based View Maps
POPA1_0985 locus 42.42 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_0985 locus 47.8 () Automated name-based View Maps
POPA1_1037 locus 86.25 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1037 locus 84.69 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1037 locus 84.69 () Automated name-based View Maps
POPA1_1038 locus 132.16 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1038 locus 128.14 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1038 locus 128.14 () Automated name-based View Maps
POPA1_1049 locus 59.29 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_1049 locus 57.3 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1049 locus 61.53 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1049 locus 61.53 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_1049 locus 68.66 () Automated name-based View Maps
POPA1_1064 locus 41.74 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1064 locus 49.34 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_1064 locus 47.7 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1064 locus 49.34 () Automated name-based View Maps
POPA1_1075 locus 75.48 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1075 locus 71.43 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_1075 locus 79.68 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1075 locus 71.43 () Automated name-based View Maps
POPA1_1105 locus 138.86 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1105 locus 135.56 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1105 locus 135.56 () Automated name-based View Maps
POPA1_1162 locus 45.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1162 locus 49.7 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1162 locus 49.7 () Automated name-based View Maps
POPA1_1189 locus 92.43 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1189 locus 90.97 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1189 locus 90.97 () Automated name-based View Maps
POPA1_1223 locus 1.24 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1223 locus 0.75 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1223 locus 0.75 () Automated name-based View Maps
POPA1_1256 locus 49.65 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1256 locus 55.49 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1256 locus 55.49 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_1256 locus 62.09 () Automated name-based View Maps
POPA1_1277 locus 100.4 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-1H POPA1_1277 locus 103.03 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-1H POPA1_1277 locus 97.68 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 1H POPA1_1277 locus 92.1 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-1H POPA1_1277 locus 97.68 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.