*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Barley-Barley, OPA 2011, Consensus
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Hordeum-OPAConsensus-2011-5H
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OPA 2011, Consensus [ View Map Set Info ]
Map Name: Hordeum-OPAConsensus-2011-5H
Map Start: 0
Map Stop: 189.89
Features by Type:
540 locus
540 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 51 to 75 of 540.       Previous | of 22 | Next
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-5H
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
POPA1_0671 locus 50.53 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0671 locus 59.4 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0671 locus 47.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0671 locus 59.4 () Automated name-based View Maps
POPA1_0688 locus 28.98 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0688 locus 34.25 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0688 locus 28.3 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0688 locus 34.25 () Automated name-based View Maps
POPA1_0695 locus 19.82 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0695 locus 25.23 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0695 locus 25.23 () Automated name-based View Maps
POPA1_0705 locus 125.09 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0705 locus 132.63 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0705 locus 132.63 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0705 locus 125.5 () Automated name-based View Maps
POPA1_0736 locus 171.58 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0736 locus 180.71 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0736 locus 225.84 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0736 locus 180.71 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0736 locus 161.4 () Automated name-based View Maps
POPA1_0741 locus 155.45 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0741 locus 144.7 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0741 locus 159.79 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0741 locus 192.87 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0741 locus 159.79 () Automated name-based View Maps
POPA1_0755 locus 136.94 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0755 locus 142.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0755 locus 142.2 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0755 locus 168.13 () Automated name-based View Maps
POPA1_0771 locus 88.05 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0771 locus 100.28 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0771 locus 113.77 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0771 locus 80.3 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0771 locus 100.28 () Automated name-based View Maps
POPA1_0778 locus 166.65 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0778 locus 175.9 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0778 locus 221.48 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0778 locus 155.6 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0778 locus 175.9 () Automated name-based View Maps
POPA1_0783 locus 130.32 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0783 locus 125.6 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0783 locus 135.72 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0783 locus 135.72 () Automated name-based View Maps
POPA1_0805 locus 122.33 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0805 locus 130.13 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0805 locus 130.13 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0805 locus 119.8 () Automated name-based View Maps
POPA1_0819 locus 139 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0819 locus 143.92 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0819 locus 131.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0819 locus 143.92 () Automated name-based View Maps
POPA1_0820 locus 154.08 Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0820 locus 143.4 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0820 locus 159.09 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0820 locus 159.09 () Automated name-based View Maps
POPA1_0834 locus 98.2 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0834 locus 108.18 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0834 locus 108.18 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0834 locus 127.09 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0834 locus 94.7 () Automated name-based View Maps
POPA1_0840 locus 50.53 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0840 locus 59.4 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0840 locus 47.7 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0840 locus 59.4 () Automated name-based View Maps
POPA1_0845 locus 136.94 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0845 locus 142.2 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0845 locus 129.4 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0845 locus 142.2 () Automated name-based View Maps
POPA1_0855 locus 132.32 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0855 locus 137.16 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0855 locus 137.16 () Automated name-based View Maps
POPA1_0856 locus 42.41 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0856 locus 51 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0856 locus 58.35 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0856 locus 51 () Automated name-based View Maps
POPA1_0869 locus 165.28 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0869 locus 173.08 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0869 locus 173.08 () Automated name-based View Maps
POPA1_0870 locus 168.67 No other positions
POPA1_0901 locus 152.93 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0901 locus 158.37 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0901 locus 143.3 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0901 locus 158.37 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0901 locus 192.87 () Automated name-based View Maps
POPA1_0902 locus 155.45 Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0902 locus 192.87 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0902 locus 159.79 () Automated name-based View Maps
Barley - Barley, 2012 9KSNP - Barley, 2012 9KSNP 5H POPA1_0902 locus 144.7 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0902 locus 159.79 () Automated name-based View Maps
POPA1_0913 locus 42.41 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0913 locus 51.3 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0913 locus 58.35 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0913 locus 51.3 () Automated name-based View Maps
POPA1_0955 locus 38.78 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0955 locus 46.23 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0955 locus 46.23 () Automated name-based View Maps
POPA1_0974 locus 21.68 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-5H POPA1_0974 locus 27 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-5H POPA1_0974 locus 27 () Automated name-based View Maps
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-5H POPA1_0974 locus 35.98 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.