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Map Set Barley-Barley, OWB, OPA2008
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Barley - Barley, OWB, OPA2008 [ View Map Set Info ]
Map Name: Hordeum-OWB-OPA2008-3H
Map Start: 0
Map Stop: 208.01
Features by Type:
372 locus
12 qtl
384 Total

Map Features

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Items 51 to 75 of 384.       Previous | of 16 | Next
Barley - Barley, OWB, OPA2008 - Hordeum-OWB-OPA2008-3H
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Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
[221259] locus 2.2 No other positions
scsnp00940 locus 134.92 Barley - Barley, Agronomic QTL Consensus - Hordeum-QTLConsensus-Agronomic-3 scsnp00940 locus 103.34 () Automated name-based View Maps
Barley - Barley, Abiotic QTL Consensus - Hordeum-QTLConsensus-Abiotic-3H scsnp00940 locus 103.34 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H scsnp00940 locus 147.12 () Automated name-based View Maps
Barley - Barley, Consensus 2005, SNP - Hordeum-Consensus2005-SNP-3H scsnp00940 locus 103.34 () Automated name-based View Maps
DsT-67 locus 69.55 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H DsT-67 locus 70.9 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H DsT-67 locus 73 () Automated name-based View Maps
bPb-9129 locus 38.46 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H bPb-9129 locus 49.9 () Automated name-based View Maps
Barley - Barley, Nure x Tremois - Hv-Nure/Tremois-3H bPb-9129 locus 42.6 () Automated name-based View Maps
DsT-27 locus 35.12 Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H DsT-27 locus 38.7 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H DsT-27 locus 38.7 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H DsT-27 locus 40.8 () Automated name-based View Maps
GBM1074 locus 26.38 Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H GBM1074 locus 28.6 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H GBM1074 locus 31.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H GBM1074 locus 20.49 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Stein - Hv-Consensus2006-Stein-3H GBM1074-3H locus 33.7 () Automated name-based View Maps
Barley - Barley, Consensus 2007, SSR - Hordeum-Consensus2007-SSR-3H GBM1074 locus 20.49 () Automated name-based View Maps
Barley - Barley, OWB, 2005 - Hordeum-OWB-2005-3H GBM1074 locus 29.7 () Automated name-based View Maps
POPA3_1341 locus 203.64 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_1341 locus 170.86 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA3_1341 locus 160.76 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_1341 locus 177.5 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_1341 locus 170.86 () Automated name-based View Maps
POPA3_1296 locus 206.91 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_1296 locus 173.17 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA3_1296 locus 164.42 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_1296 locus 179.81 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_1296 locus 173.17 () Automated name-based View Maps
POPA3_0928 locus 134.92 Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0928 locus 117.87 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0928 locus 128.01 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA3_0928 locus 107.2 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0928 locus 117.87 () Automated name-based View Maps
POPA3_0507 locus 151.55 Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA3_0507 locus 114.64 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA3_0507 locus 127.87 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA3_0507 locus 127.87 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA3_0507 locus 136.18 () Automated name-based View Maps
POPA2_1410 locus 19.76 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1410 locus 18.21 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA2_1410 locus 20.32 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1410 locus 16.33 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1410 locus 16.33 () Automated name-based View Maps
POPA2_1387 locus 206.91 Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA2_1387 locus 164.42 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1387 locus 173.17 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_1387 locus 179.81 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1387 locus 173.17 () Automated name-based View Maps
POPA2_1237 locus 192.72 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_1237 locus 162.15 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_1237 locus 162.15 () Automated name-based View Maps
POPA2_0408 locus 62.95 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA2_0408 locus 67.27 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA2_0408 locus 58.31 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA2_0408 locus 55.57 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA2_0408 locus 55.57 () Automated name-based View Maps
POPA1_1342 locus 71.72 Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_1342 locus 65.52 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA1_1342 locus 64.19 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_1342 locus 65.52 () Automated name-based View Maps
Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_1342 locus 77.37 () Automated name-based View Maps
POPA1_0691 locus 29.64 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0691 locus 28.02 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0691 locus 26.9 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA1_0691 locus 29.6 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0691 locus 26.9 () Automated name-based View Maps
POPA1_0598 locus 38.46 No other positions
POPA1_0200 locus 76.14 Barley - Barley, OPA 2011, Consensus - Hordeum-OPAConsensus-2011-3H POPA1_0200 locus 83.58 () Automated name-based View Maps
Barley - Barley, OPA123-2008, Consensus - Hordeum-OPA123-2008-3H POPA1_0200 locus 70.71 () Automated name-based View Maps
Barley - Barley, OPA 2009, Consensus - Hordeum-OPA-2009-3H POPA1_0200 locus 70.71 () Automated name-based View Maps
Barley - Barley, USDA Core, 2014 Consensus - Barley-Core-2014_3H POPA1_0200 locus 66.38 () Automated name-based View Maps
bPb-5346 locus 206.91 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-5346 locus 184.6 () Automated name-based View Maps
bPb-0136 locus 206.91 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-0136 locus 181.3 () Automated name-based View Maps
bPb-8962 locus 206.91 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-8962 locus 178.6 () Automated name-based View Maps
bPb-0164 locus 201.47 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-0164 locus 170.7 () Automated name-based View Maps
ABC805 locus 194.92 Barley - Barley, BinMap 2005 - Hordeum-Bins-3H ABC805 locus 161 () Automated name-based View Maps
Barley - Barley, Consensus 2006, Marcel - Hv-Consensus2006-Marcel-3H ABC805 locus 148.48 () Automated name-based View Maps
Barley - Barley, OWB, 2004 - Hordeum-OWB-2004-3H ABC805 locus 167.7 () Automated name-based View Maps
Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H ABC805 locus 157.6 () Automated name-based View Maps
Barley - Barley, OWB, SNP - Hordeum-OWB-SNP-3H ABC805 locus 209.23 () Automated name-based View Maps
Barley - Barley, OWB - Hordeum-OWB-3H ABC805 locus 191.8 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H ABC805 locus 158 () Automated name-based View Maps
bPb-1829 locus 187.19 Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-1829 locus 155.8 () Automated name-based View Maps
bPb-0200 locus 189.39 Barley - Barley, Integrated, Marcel 2009 - Hv-Integrated2009-3H bPb-0200 locus 150.5 () Automated name-based View Maps
Barley - Barley, Consensus 2006, DArT - Hordeum-Consensus2006-DArT-3H bPb-0200 locus 154.2 () Automated name-based View Maps

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