*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Oat-Oat, KxO/QTL
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Oat-KxO/Q-27
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
qtl
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Oat - Oat, KxO/QTL [ View Map Set Info ]
Map Name: Oat-KxO/Q-27
Map Start: -1
Map Stop: 44
Features by Type:
6 locus
5 qtl
11 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 11 of 11.
Oat - Oat, KxO/QTL - Oat-KxO/Q-27
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xcdo1402A locus 0 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xcdo1402A locus 16 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xcdo1402A locus 0 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xcdo1402A locus 0 () Automated name-based View Maps
Xisu582A locus 6 Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xisu582A locus 13.75 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 Xisu582A locus 13.75 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xisu582A locus 6 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xisu582A locus 24 () Automated name-based View Maps
Xcdo58B locus 12 Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 Xcdo58B locus 18.75 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xcdo58B locus 12 () Automated name-based View Maps
Oat - Oat-1997-64Lines - Oat-1997-64Lines_27 Xcdo58B locus 0 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xcdo58B locus 18.75 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xcdo58B locus 32 () Automated name-based View Maps
Xksu-A1 locus 25 Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xksu-A1 locus 54 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xksu-A1 locus 25 () Automated name-based View Maps
Xbcd1872A locus 30.2 Oat - Oat, KxO - Oat-KxO-27 Xbcd1872A locus 30.2 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 Xbcd1872A locus 35 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xbcd1872A locus 56 () Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xbcd1872A locus 22.5 (cM) Automated name-based View Maps
Xcdo942 locus 43.4 Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_16 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-27 Xcdo942 locus 43.4 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-4 Xcdo942 locus 35.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_9 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_23 Xcdo942 locus 6 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo942 locus 116.2 () Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2003-OxM-QTL1 - Oat-2003-OxM-QTL1_6 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat-2001-KxO - Oat-2001-KxO_27 Xcdo942 locus 35 (cM) Automated name-based View Maps
Oat - Oat-2003-OglexMAM17-5 - Oat-2003-OglexMAM17-5_2 Xcdo942 locus 6 (cM) Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-27 Xcdo942 locus 80 () Automated name-based View Maps
Oat - Oat-2001-KxO-QTL - Oat-2001-KxO-QTL_27 Xcdo942 locus 35 (cM) Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xcdo942 locus 10.1 () Automated name-based View Maps
Yield, KxO-27 qtl -1 - 1.8 No other positions
Test weight, KxO-27-a qtl 11.4 - 44 No other positions
Test weight, KxO-27-b qtl 28.1 - 30.8 No other positions
Test weight, KxO-27-c qtl 24.4 - 30.8 No other positions
Groat percentage, KxO-27 qtl 24.4 - 27 No other positions

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.