*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rye-Rye, UC90 x E-line
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Secale-UxE-6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Rye - Rye, UC90 x E-line [ View Map Set Info ]
Map Name: Secale-UxE-6
Map Start: 0.00
Map Stop: 114.00
Features by Type:
23 locus
23 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 23 of 23.
Rye - Rye, UC90 x E-line - Secale-UxE-6
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Centromere-6R locus 39.00 - 62.70 Rye - Rye, Ds2 x RxL10, RAPD - Secale-DxR-RAPD-6R Centromere-6R locus 75.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Centromere-6R locus 38.60 () Automated name-based View Maps
Xpsr371 locus 66.80 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr371 locus 66.40 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D Xpsr371 locus 87.00 () Automated name-based View Maps
Rye - Rye, Hannover - Secale-Wricke-6R Xpsr371 locus 22.70 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-6A Xpsr371 locus 0.70 () Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-6 Xpsr371 locus 5.10 () Automated name-based View Maps
Xcdo1081 locus 35.20 Oat - Oat, KxO/QTL - Oat-KxO/Q-5 Xcdo1081 locus 80.80 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo1081 locus 35.10 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D Xcdo1081 locus 87.00 () Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-5 Xcdo1081 locus 68.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-5 Xcdo1081 locus 82.80 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-F Xcdo1081 locus 21.70 () Automated name-based View Maps
Xcdo405 locus 53.40 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D Xcdo405 locus -3.08 () Automated name-based, Automated name-based View Maps
Barley - H. bulbosum, PB1 x PB11 - Hbulbosum-PB1xPB11-2 Xcdo405 locus 52.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo405 locus 53.30 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2ABD Xcdo405 locus -64.00 () Automated name-based, Automated name-based View Maps
Oat - Oat, KxO, AFLP - Oat-KxO/AFLP-8 Xcdo405 locus 12.00 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-8 Xcdo405 locus 0.00 () Automated name-based View Maps
Oat - Oat, KxO/QTL - Oat-KxO/Q-8 Xcdo405 locus 0.00 () Automated name-based View Maps
Xpsr312 locus 39.00 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6A Xpsr312 locus 67.00 () Automated name-based View Maps
Rye - Rye, P87 x P105, update - Secale-PxP-update-6R Xpsr312 locus 35.10 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr312 locus 38.90 () Automated name-based View Maps
Rye - Rye, P87 x P105 - Secale-PxP-6 Xpsr312 locus 35.00 () Automated name-based View Maps
Xuah30 locus 30.30 Rye - Rye, ExR - Secale-ExR-1 Xuah30 locus 2.60 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-1R Xuah30 locus 38.60 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xuah30 locus 30.20 () Automated name-based View Maps
Xbcd385 locus 114.00 Rye - Rye_2009_consensus - Rye-2009-Consensus-4R Xbcd385 locus 55.50 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-7ABD Xbcd385 locus -41.00 () Automated name-based, Automated name-based View Maps
Rye - Rye, ExR - Secale-ExR-4 Xbcd385 locus 4.40 () Automated name-based View Maps
Oat - Oat, KxO - Oat-KxO-23 Xbcd385 locus 35.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd385 locus 113.20 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-7B Xbcd385 locus 41.00 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-E Xbcd385 locus 105.80 () Automated name-based View Maps
Xuah61 locus 94.10 Rye - Rye, ExR - Secale-ExR-6 Xuah61 locus 0.00 () Automated name-based View Maps
Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xuah61 locus 92.10 () Automated name-based View Maps
Xcdo244 locus 114.00 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo244 locus 113.20 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xcdo244 locus 24.90 () Automated name-based View Maps
Xrz87 locus 12.20 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xrz87 locus 12.20 () Automated name-based View Maps
Diploid oat - Diploid Oat, Cornell2 - Avena-Sorrells-B Xrz87 locus 68.90 () Automated name-based View Maps
Xscg202 locus 0.00 No other positions
Xscg33.2 locus 4.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xscg33.2 locus 4.70 () Automated name-based View Maps
Xscg187 locus 16.80 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xscg187 locus 16.70 () Automated name-based View Maps
Xiag94e locus 26.20 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xiag94e locus 26.10 () Automated name-based View Maps
Xuah30e locus 28.50 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xuah30e locus 28.50 () Automated name-based View Maps
Xrz995 locus 62.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xrz995 locus 62.30 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6B Xrz995 locus 87.00 () Automated name-based View Maps
Rice - Rice, BxOl - Rice-CU-1 RZ995 locus 117.30 () Automated name-based View Maps
Wheat ABD - Wheat, Yr genes and QTL - Wheat, Yr genes and QTL 6B rz995 locus 10.90 () Automated name-based View Maps
Xscg146 locus 62.70 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xscg146 locus 62.30 () Automated name-based View Maps
Xcdo345d locus 66.80 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xcdo345d locus 66.40 () Automated name-based View Maps
Xscg184sc locus 68.90 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xscg184sc locus 66.40 () Automated name-based View Maps
Xpsr129u locus 79.90 No other positions
Xscg217 locus 93.20 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xscg217 locus 92.10 () Automated name-based View Maps
Xpsr1149b locus 94.10 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xpsr1149b locus 93.40 () Automated name-based View Maps
Xbcd265.2 locus 97.30 Rye - Rye_2009_consensus - Rye-2009-Consensus-6R Xbcd265.2 locus 96.60 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.