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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical
(Reference Set)
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Correspondences
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Maps Ta-Physical-Gill-4D
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
baccontig
breakpoint
breakpointinterval
chromband
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical [ View Map Set Info ]
Map Name: Ta-Physical-Gill-4D
Map Start: -3.2
Map Stop: 5.8
Features by Type:
11 baccontig
15 breakpoint
14 breakpointinterval
16 chromband
28 locus
84 Total

Map Features

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Items 26 to 50 of 84.       Previous | of 4 | Next
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4D
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XksuC2 locus 4.94 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD XksuC2 locus 91 () Automated name-based View Maps
XksuG10 locus 4.94 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4B XksuG10 locus 40 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D XksuG10 locus 150 () Automated name-based, Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-4A XksuG10 locus 15.3 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD XksuG10 locus 91 () Automated name-based View Maps
Xcdo1312 locus 4.94 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-5ABD Xcdo1312 locus 93 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-4ABD Xcdo1312 locus 91 () Automated name-based View Maps
Wheat A - T. monococcum, DV92 x G3116 - Tm-Dubcovsky2-5A Xcdo1312 locus 97.7 () Automated name-based, Automated name-based View Maps
0/4DS-2 breakpointinterval -3.2 - -2.7 No other positions
4DS-2/4DS-3 breakpointinterval -2.7 - -2.18 No other positions
4DS-3/4DS-5 breakpointinterval -2.18 - -2.08 No other positions
4DS-5/4DS-1 breakpointinterval -2.08 - -1.74 No other positions
4DS-1/Cent breakpointinterval -1.74 - 0 No other positions
Cent/4DL-5 breakpointinterval 0 - 0.24 No other positions
4DL-5/4DL-6 breakpointinterval 0.24 - 2.09 No other positions
4DL-7/4DL-1 breakpointinterval 2.26 - 2.58 No other positions
4DL-1/4DL-3 breakpointinterval 2.58 - 2.88 No other positions
4DL-3/4DL-8 breakpointinterval 2.88 - 2.98 No other positions
4DL-8/4DL-13 breakpointinterval 2.98 - 3.14 No other positions
4DL-13/4DL-2 breakpointinterval 3.14 - 4.03 No other positions
4DL-2/4DL-12 breakpointinterval 4.03 - 4.09 No other positions
4DL-12/0 breakpointinterval 4.09 - 5.8 No other positions
4DS1.6 chromband -2.9 - -1.5 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DS1.6 chromband -2.9 - -1.5 () Automated name-based View Maps
Cent-4D chromband -0.05 - 0.05 Wheat ABD - Wheat C-bands - CS-Cyto-4D Cent-4D chromband -0.05 - 0.05 () Automated name-based View Maps
4DL1.2 chromband 0 - 1.1 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.2 chromband 0 - 1.1 () Automated name-based View Maps
4DL1.41 chromband 1.2 - 2 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.41 chromband 1.2 - 2 () Automated name-based View Maps
4DL1.42 chromband 2 - 2.1 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.42 chromband 2 - 2.1 () Automated name-based View Maps
4DL1.43 chromband 2.1 - 3.1 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.43 chromband 2.1 - 3.1 () Automated name-based View Maps
4DL1.5 chromband 3.1 - 3.4 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.5 chromband 3.1 - 3.4 () Automated name-based View Maps
4DL1.7 chromband 3.6 - 4.1 Wheat ABD - Wheat C-bands - CS-Cyto-4D 4DL1.7 chromband 3.6 - 4.1 () Automated name-based View Maps

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