*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Physical, SSR
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Chinese_Spring_Deletion_SSR_5B
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
breakpointinterval
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Cytogenetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Physical, SSR [ View Map Set Info ]
Map Name: Chinese_Spring_Deletion_SSR_5B
Map Start: -1
Map Stop: 1
Features by Type:
12 breakpointinterval
42 locus
54 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 54.       Previous | of 3 | Next
Wheat ABD - Wheat, Physical, SSR - Chinese_Spring_Deletion_SSR_5B
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xbarc59-5B locus 0.65 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xbarc59-5B locus 153.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc59-5B locus 121.7 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc59-5B locus 145.2 () Automated name-based View Maps
Xbarc243-5B locus 0.9 Wheat ABD - Wheat-2014-Consensus-Ug99-Update - Wheat-2014-Consensus-Ug99-Update barc243 locus 155.57 () Automated name-based View Maps
Wheat ABD - Wheat, Louise x Penawawa - Louise/Penawawa-5B Xbarc243-5B locus 157.2 () Automated name-based View Maps
Wheat ABD - Wheat_Consensus_2014_Ug99_Rust - Wheat_Consensus_2014_Ug99_Rust_5 barc243 locus 155.57 () Automated name-based View Maps
Xgwm639-5B locus 0.65 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm639-5B locus 77.1 () Automated name-based View Maps
Wheat ABD - Wheat, P91193D1 x P92201D5 - P91193D1/P92201D5-5B Xgwm639-5B locus 136.1 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm639-5B locus 62 () Automated name-based View Maps
Wheat AB - T. turgidum, Omrabi5 x dicoccoides, QTL - Tt-Oxd-QTL-5B Xgwm639-5B locus 135.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xgwm639-5B locus 53.2 () Automated name-based View Maps
Wheat AB - T. turgidum, Messapia x dicoccoides, SSR - Tturgidum-SSR-5B Xgwm639-5B locus 39.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm639-5B locus 73.3 () Automated name-based View Maps
Xgwm443-5B locus -0.22 Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-5B Xgwm443-5B locus 13.2 () Automated name-based View Maps
Wheat ABD - Wheat, Arina x Forno - Triticum-AxF-5B Xgwm443-5B locus 8.1 () Automated name-based View Maps
Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xgwm443-5B locus 31.6 () Automated name-based View Maps
Xbarc32-5B locus 0.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc32-5B locus 14.4 () Automated name-based View Maps
Xbarc69-5B locus 0.78 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc69-5B locus 120.4 () Automated name-based View Maps
Xbarc89-5B locus 0.14 Wheat ABD - Wheat, Consensus SSR, 2004 - Ta-SSR-2004-5B Xbarc89-5B locus 66.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-5B Xbarc89-5B locus 37.3 () Automated name-based View Maps
Xgwm513-5B locus 0.14 No other positions
Xgwm608-5B locus 0.78 No other positions
Xbarc11-5B locus 0.14 No other positions
Xbarc58-5B locus 0.14 No other positions
Xbarc88-5B locus 0.65 No other positions
Xbarc1032-5B locus 0.65 No other positions
Xbarc1061-5B locus 0.76 No other positions
Xgdm138-5B locus -0.22 No other positions
XbarcM120-5B locus -0.22 No other positions
XbarcM172-5B locus 0.14 No other positions
5BS6-0.81-1.00 breakpointinterval -1 - -0.81 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BS6-0.81-1.00 breakpointinterval -1 - -0.81 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BS6-0.81-1.00 breakpointinterval -1 - -0.81 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5B 5BS6-0.81-1.00 breakpointinterval -1 - -0.81 () Automated name-based View Maps
5BS5-0.71-0.81 breakpointinterval -0.81 - -0.71 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BS5-0.71-0.81 breakpointinterval -0.81 - -0.71 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5B 5BS5-0.71-0.81 breakpointinterval -0.81 - -0.71 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BS5-0.71-0.81 breakpointinterval -0.81 - -0.71 () Automated name-based View Maps
5BS8-0.56-0.71 breakpointinterval -0.71 - -0.56 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BS8-0.56-0.71 breakpointinterval -0.71 - -0.56 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5B 5BS8-0.56-0.71 breakpointinterval -0.71 - -0.56 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BS8-0.56-0.71 breakpointinterval -0.71 - -0.56 () Automated name-based View Maps
C-5BL6-0.29 breakpointinterval 0 - 0.29 Wheat ABD - Wheat deletion-line bins - CS-deletions-5B C-5BL6-0.29 breakpointinterval 0 - 0.29 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, Group 5 - Ta-Physical-Sarma-5B C-5BL6-0.29 breakpointinterval 0 - 0.29 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B C-5BL6-0.29 breakpointinterval 0 - 0.29 () Automated name-based View Maps
5BL14-0.75-0.76 breakpointinterval 0.75 - 0.76 Wheat ABD - 5BL, CS, 0.75-0.79 interval - 5BL, CS, 0.75-0.79 interval 5BL14-0.75-0.76 breakpointinterval 0 - 6 () Automated name-based View Maps
Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BL14-0.75-0.76 breakpointinterval 0.75 - 0.76 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BL14-0.75-0.76 breakpointinterval 0.75 - 0.76 () Automated name-based View Maps
5BL9-0.76-0.79 breakpointinterval 0.76 - 0.79 Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BL9-0.76-0.79 breakpointinterval 0.76 - 0.79 () Automated name-based View Maps
Wheat ABD - 5BL, CS, 0.75-0.79 interval - 5BL, CS, 0.75-0.79 interval 5BL9-0.76-0.79 breakpointinterval 6 - 49.5 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BL9-0.76-0.79 breakpointinterval 0.76 - 0.79 () Automated name-based View Maps
5BL1-0.55-0.75 breakpointinterval 0.55 - 0.75 Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BL1-0.55-0.75 breakpointinterval 0.55 - 0.75 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BL1-0.55-0.75 breakpointinterval 0.55 - 0.75 () Automated name-based View Maps
5BL16-0.79-1.00 breakpointinterval 0.79 - 1 Wheat ABD - Wheat deletion-line bins - CS-deletions-5B 5BL16-0.79-1.00 breakpointinterval 0.79 - 1 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_5B 5BL16-0.79-1.00 breakpointinterval 0.79 - 1 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.