*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, DR Genes
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-DR-2D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, DR Genes [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-DR-2D
Map Start: -129.4
Map Stop: 79.3
Features by Type:
9 baccontig
32 locus
41 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 41 of 41.       Previous | of 2
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-2D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
XksuH9-2D locus 54.7 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D XksuH9-2D locus 182.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D XksuH9-2D locus 182 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D XksuH9-2D locus 75.7 () Automated name-based View Maps
Xglk558-2D locus 55.2 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xglk558-2D locus 75.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D Xglk558-2D locus 183.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xglk558-2D locus 183.6 () Automated name-based View Maps
XksuD23-2D locus 55.8 Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D XksuD23-2D locus 184.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D XksuD23-2D locus 184.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D XksuD23-2D locus 75.1 () Automated name-based View Maps
XksuH16-2D locus 59.4 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D XksuH16-2D locus 188.2 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-2D XksuH16-2D locus 61.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-2D XksuH16-2D locus 182.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D XksuH16-2D locus 78.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D XksuH16-2D locus 188.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR 2 - Ta-Synthetic/Opata-SSR2-2D XksuH16-2D locus 209.4 () Automated name-based View Maps
Xbcd410-2D locus 63.2 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xbcd410-2D locus 73.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D Xbcd410-2D locus 186.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xbcd410-2D locus 183 () Automated name-based View Maps
Xcdo36-2D locus 69.4 Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-2D Xcdo36-2D locus 191.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D Xcdo36-2D locus 196.2 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-2D Xcdo36-2D locus 165.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-2D Xcdo36-2D locus 182.3 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-2D Xcdo36-2D locus 154.7 () Automated name-based View Maps
Xfba314-2D locus 79.3 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D Xfba314-2D locus 79.7 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-2D Xfba314-2D locus 199.2 () Automated name-based View Maps
Wheat ABD - Wheat, Courtot x Chinese Spring, GPW - Ta-Courtot/CS-GPW-2D Xfba314-2D locus 256.1 () Automated name-based View Maps
D1.1_ctg161 baccontig -88.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg161 baccontig 19.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg161 baccontig 32 () Automated name-based View Maps
D1.1_ctg216 baccontig 21.3 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg216 baccontig 58.3 () Automated name-based View Maps
D1.1_ctg2905 baccontig 54.7 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg2905 baccontig 75.7 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-5D D1.1_ctg2905 baccontig 8.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D D1.1_ctg2905 baccontig 18 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg2905 baccontig 113 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D D1.1_ctg2905 baccontig 4.98 () Automated name-based, Automated name-based View Maps
D1.1_ctg3434 baccontig 63.2 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg3434 baccontig 111 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg3434 baccontig 73.2 () Automated name-based View Maps
D1.1_ctg4236 baccontig 26.5 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg4236 baccontig 63.4 () Automated name-based View Maps
D1.1_ctg4862 baccontig -88.9 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg4862 baccontig 32 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg4862 baccontig 19.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_1D D1.1_ctg4862 baccontig 0.7 () Automated name-based View Maps
D1.1_ctg6289 baccontig 41.6 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg6289 baccontig 67.2 () Automated name-based View Maps
D1.1_ctg7196 baccontig 54.7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg7196 baccontig 113 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg7196 baccontig 75.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-4D D1.1_ctg7196 baccontig 18 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-2D D1.1_ctg7196 baccontig 4.98 () Automated name-based, Automated name-based View Maps
D1.1_ctg7448 baccontig -39.4 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-2D D1.1_ctg7448 baccontig 34 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-2D D1.1_ctg7448 baccontig 30.7 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-1D D1.1_ctg7448 baccontig 4.46 () Automated name-based, Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.