*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Wheat ABD-Wheat, Synthetic x Opata, DR Genes
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps Ta-Synthetic/Opata-DR-3D
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
baccontig
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Wheat ABD - Wheat, Synthetic x Opata, DR Genes [ View Map Set Info ]
Map Name: Ta-Synthetic/Opata-DR-3D
Map Start: -77
Map Stop: 104.6
Features by Type:
19 baccontig
28 locus
47 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 47 of 47.       Previous | of 2
Wheat ABD - Wheat, Synthetic x Opata, DR Genes - Ta-Synthetic/Opata-DR-3D
(Click headers to resort)
Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Xfbb316-3D locus 63 Wheat ABD - Wheat, Synthetic x Opata, GPW - Ta-Synthetic/Opata-GPW-3D Xfbb316-3D locus 128.1 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-3D Xfbb316-3D locus 142.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, update - Ta-Synthetic/Opata-update-3D Xfbb316-3D locus 229.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-3D Xfbb316-3D locus 133.6 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D Xfbb316-3D locus 79.3 () Automated name-based View Maps
Xksu914(Glb3)-3D locus 64.6 No other positions
XksuG59-3D locus 104.6 Wheat ABD - Wheat, Synthetic x Opata, SSR-D - Ta-Synthetic/Opata-SSR_D-3D XksuG59-3D locus 180.4 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, gbx RFLP - Ta-Synthetic/Opata-gbx-3D XksuG59-3D locus 159.8 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, SSR - Ta-Synthetic/Opata-SSR-3D XksuG59-3D locus 163.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, update - Ta-Synthetic/Opata-update-3D XksuG59-3D locus 297.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata - Ta-Synthetic/Opata-3D XksuG59-3D locus 171.3 () Automated name-based View Maps
D1.1_ctg10420 baccontig 35.7 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg10420 baccontig 92 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg10420 baccontig 62.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg10420 baccontig 53 () Automated name-based View Maps
D1.1_ctg1235 baccontig 43.8 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg1235 baccontig 67.8 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg1235 baccontig 94 () Automated name-based View Maps
D1.1_ctg12778 baccontig -14.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg12778 baccontig 29.4 () Automated name-based View Maps
D1.1_ctg3640 baccontig 5.1 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg3640 baccontig 69 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg3640 baccontig 40.9 () Automated name-based View Maps
D1.1_ctg3726 baccontig 63 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg3726 baccontig 111 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg3726 baccontig 79.3 () Automated name-based View Maps
D1.1_ctg4333 baccontig -14.9 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg4333 baccontig 29.4 () Automated name-based View Maps
Wheat ABD - Wheat, Physical - Ta-Physical-Gill-3D D1.1_ctg4333 baccontig -0.59 () Automated name-based, Automated name-based View Maps
D1.1_ctg5041 baccontig 104.6 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg5041 baccontig 103 () Automated name-based View Maps
D1.1_ctg5172 baccontig 63 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg5172 baccontig 79.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg5172 baccontig 111 () Automated name-based View Maps
D1.1_ctg5195 baccontig 63 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg5195 baccontig 111 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg5195 baccontig 79.3 () Automated name-based View Maps
D1.1_ctg5319 baccontig 38.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg5319 baccontig 93 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3D D1.1_ctg5319 baccontig -4.9 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg5319 baccontig 64.2 () Automated name-based View Maps
D1.1_ctg551 baccontig 41.1 Wheat ABD - Wheat, Gale - Ta-Gale-4D D1.1_ctg551 baccontig 0.5 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg551 baccontig 66.3 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg551 baccontig 98 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3D D1.1_ctg551 baccontig 35.9 () Automated name-based View Maps
D1.1_ctg6151 baccontig -43.1 Wheat ABD - Wheat, Physical - Ta-Physical-Gill-6D D1.1_ctg6151 baccontig 3.46 () Automated name-based, Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-6D D1.1_ctg6151 baccontig 157 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg6151 baccontig 22.5 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-6D D1.1_ctg6151 baccontig 47.1 () Automated name-based View Maps
D1.1_ctg620 baccontig 35.7 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg620 baccontig 62.7 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-1D D1.1_ctg620 baccontig 53 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg620 baccontig 92 () Automated name-based View Maps
D1.1_ctg6228 baccontig -43.1 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg6228 baccontig 22.5 () Automated name-based View Maps
D1.1_ctg7512 baccontig -35.4 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg7512 baccontig 28.1 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg7512 baccontig 45 () Automated name-based View Maps
D1.1_ctg787 baccontig -77 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg787 baccontig 21.8 () Automated name-based View Maps
D1.1_ctg8783 baccontig 38.3 Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg8783 baccontig 93 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg8783 baccontig 64.2 () Automated name-based View Maps
D1.1_ctg9045 baccontig -20.6 Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg9045 baccontig 35.1 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg9045 baccontig 52 () Automated name-based View Maps
D1.1_ctg9079 baccontig 41.1 Wheat ABD - Wheat, Physical, EST - Chinese_Spring_Deletion_4D D1.1_ctg9079 baccontig 0.64 () Automated name-based View Maps
Wheat ABD - Wheat, Composite, 2004 - Wheat-Composite2004-3D D1.1_ctg9079 baccontig 98 () Automated name-based View Maps
Wheat ABD - Wheat, Synthetic x Opata, BARC - Ta-Synthetic/Opata-BARC-3D D1.1_ctg9079 baccontig 66.3 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-4D D1.1_ctg9079 baccontig 0.5 () Automated name-based View Maps
Wheat ABD - Wheat, Gale - Ta-Gale-3D D1.1_ctg9079 baccontig 35.9 () Automated name-based View Maps

CMap is free software from the GMOD project

  Contact the GrainGenes Curators

GrainGenes is a product of the US Department of Agriculture.