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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Diploid oat-Diploid Oat, AFLP
(Reference Set)
Min.
Correspondences
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Maps Avena-Yu-F
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
locus
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
BLASTN
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Diploid oat - Diploid Oat, AFLP [ View Map Set Info ]
Map Name: Avena-Yu-F
Map Start: 0
Map Stop: 434.8
Features by Type:
59 locus
59 Total

Map Features

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Items 1 to 25 of 59.       of 3 | Next
Diploid oat - Diploid Oat, AFLP - Avena-Yu-F
(Click headers to resort)		 Comparative Maps
Feature Type Position () Map Feature Type Position Evidence Actions
Bare-M13-7a locus 0 No other positions
E9M11-7a locus 13.5 No other positions
E11M14-3a locus 21.4 No other positions
E11M5-7b locus 22.6 No other positions
E15M11-3a locus 33.4 No other positions
E5M16-3b locus 39.6 No other positions
E16M11-5a2 locus 45.9 No other positions
E3M1-10a locus 51.1 No other positions
E16M9-11b locus 59.8 No other positions
E16M9-13b locus 60.4 No other positions
Xisu1357 locus 64.3 Oat - Oat-2013-SxW-RGA - Oat-2013-SxW-RGA_AswH isu1357 locus 32 (cM) Automated name-based View Maps
Diploid oat - Diploid Oat, Iowa St. - Avena-Wise-F ISU1357 locus 34.5 () Automated name-based View Maps
E15M4-9b locus 65.9 No other positions
E7M4-8a locus 85.9 No other positions
E12M12-8b locus 87.8 No other positions
Bare-E5-1b locus 96.8 No other positions
E11M15-7b locus 161.4 No other positions
E3M2-7a locus 126.5 No other positions
E11M5-4b locus 131.3 No other positions
Bare-M15-15b locus 142.2 No other positions
E11M5-5a locus 153.6 No other positions
E11M10-9b locus 164.9 No other positions
E3M2-12b locus 169.8 No other positions
E13M15-5a locus 176.9 No other positions
E16M11-3a locus 200 No other positions
E3M1-7a locus 201 No other positions

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